RNA id: XM_043240924.1


Basic Information

Item Value
RNA id XM_043240924.1
length 2377
RNA type mRNA
GC content 0.47
exon number 11
gene id senp3a
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 10926823 ~ 10933753 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGAGTGTTTTCGCCCTAAAGAAGCGCCAGCCCTCATTGAATGAGCCAATTTAAATCAGCCCTTATTTTATCTTTCGTTTCATATCCTCGCAAGACTTGGTTATCCGCTTTTTGCGTTGGTAGACAACGCCAAAGCTTTTGGCTTGAGGTTACGGTTAAACGTGAGGAGGCAGGCTGGCGCAGGTCGCAGGGTGCTCCTGGATCATGAGAGACAGTGGCAGCAGCCTGGCTCAAACACACTGGTCCAATGAGCTGACACTGACCACCGGGCAGGAGGGCGCCGGGGGTGGGGGTGCCATCGGAGGTGGCCATTTAATGAATCCAGCCATGgcccagcatgcaccgagccCAGCCCACTTCAAACTAGGGCGCAGAGAGGAGGATGTCCGAATGTGGGGTGCAGAATACACTGTCCCTGAAGTGAAGGACGAGGAGGAAAATGTGGAGATGGAGAGTGAAGAGGATGTGGTGGAAAGGAAAGCCGAGGGTGCTTTGCGGTGTAACGATAAAGGTGACGACGAAGAGTGGGCCTCTCCTGAGCACGCAAAGCTAGTGGAAATGGATGTCAGTGTTACAGATGACTTTACGCTCTGCTTGGCCCAGACTAGCCCCAGTCCTCTTAAAGAGAGGAAGCTGGCCGGGTTGCGGTACCGGGGCCAGAGGTGTTTCAACATTCACTACCGTTTGGCCCAGCAGTGGAGAACTTGGCGTCAGCGAGCCAAATGGGCAGGAACTATGGGATACAGGAGGGTACGCAGATGTCACAGACGCCGCCATGCTGGCAGCCGAGCTTTTCAGAGACCGCCAGGCAGTTCATTGTTAAACGGAGACCCTGAACGACGTTTGGGGACAACAGAGGAAAGAGGAGCCGATTTATCTGGCTCCTGTAGCACAAATGGGATTCCGAAAGGAAGGGATGGTATCCATGGTGCGCTCATGGGGGACCGGGAGGGACGGGCCTCCCCTGCAACTGTCCAGTCTCAACGGGAAAAATCCTCCCCACAGAATCAGCTTAGCAGCGAACACATCTCTTGTGTACAAGGTATTCTGGATGAGTTTCTGCAGCAGTATGGGAGTTTGATTCCCATCCATGTGGATGAGGTGGTAGAGAAGCTTCAGGAGATCTTTAATGAGAGCTTTTCAAGTCCTCAAAGGAAGTTAATGGTGCAACATCTAATGCAGTCCTATCAGCGGATGTCTGGAAGTGCAGTGATGCGGGGGTTTCGTGTAAATTACAAGCGTCATGTTCTTACCATGGATGATCTGAGCACACTTTATGGTCAGAACTGGCTCAATGATCAGGTCATGAACATGTATGGGGATTTGGTCATGGATGCTGCTCCTGAAAAGGTCCACTTTTTCAACAGCTTCTTTTATGACAAACTTCGGACGAAAGGTTATGACGGGGTCAAACGGTGGACAAAAAATGTTGATATTTTCCAGAAGAAGTTCTTATTGATCCCTATTCATCTGGAAGTGCACTGGTcattagtgtgtgtgaatgttccTCAGCGTAGCATCACGTATTTCGACTCCCAGAGGACCCTCAACCGACGTTGCCCAAAACACATTGCCAAATACCTGCAAGCGGAGGCAATCAAGAGAGAACAGAAGGAGTTTTACACAGAGTGGAAAGGCTTTTTCAAAATGAATGTGGCAAGGCAGAACAATGACAGTGATTGTGGAGCTTTTGTCCTTCAGTACTGTAAGTGCCTGGCCCTGGAACAACCTTTCAGCTTCGGTCAGCAGGATATGCCCAAGCTACGGAGACAAATGTACAAAGAACTGTGTCACTGTAAACTGTCTCTGTGAGACCGTGACATCTTACACTTCTATATAAGCTCCAAGTCCAGACAGCATTTAGGCGGGAAACGTGCAAACGTTTTTAACCCTCTTTTCGTTCAATGACTTTGTATTTTGACTTGATGAATGCCATACTCTGTTCGGCCCAGTTGTTTGTTTGCTCGGATCAAAACACAAGAGGAGTTGTTTTCTAGAAGTGGGAGGGGGAGCTGACCTCAGTGAACTGTTCTTTAGGTGCCGCCATTTTGTtggcaattatattttttatttttcacgatCTTGATGTCAGTAACTTGTATGTTAAAGGTGATAACATTGACCGGTGAGGGAGAAGACTtgcagacattttaaaaatgtaatgcgaCATTCATTTACTGAGAGTCAATACGGACCATGACACTATATGAgcagttttgtttgttcaaTATTGTTTGTCTGTTGTTATGTATCTGTGCGAGTTAAGATGCAAAACTATGGAgatgaaaaaaagagcagctGTAAATTAAACTGTTTTATATCTTTTGAGATGCATACGTTGTTGTAAGATGTACTaataaaaactgagaaaataaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K08593 SENP3; sentrin-specific protease 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51838 lncRNA upstream 88456 10838012 ~ 10838367 (+) True G35202
TU51833 lncRNA upstream 110522 10813457 ~ 10816301 (+) True G35197
TU51689 lncRNA upstream 379198 10547221 ~ 10547625 (+) True G35081
TU51632 lncRNA upstream 593015 10333219 ~ 10333808 (+) True G35043
TU51631 lncRNA upstream 596501 10329889 ~ 10330322 (+) True G35042
TU51871 lncRNA downstream 11303 10945056 ~ 11019192 (+) True G35229
TU51912 lncRNA downstream 203299 11137052 ~ 11147242 (+) False LOC122346180
TU51914 lncRNA downstream 203299 11137052 ~ 11147242 (+) True LOC122346180
TU51930 lncRNA downstream 253501 11187254 ~ 11187694 (+) True G35267
TU51941 lncRNA downstream 270747 11204500 ~ 11208454 (+) False G35274
XM_043239139.1 mRNA upstream 793 10922870 ~ 10926030 (+) True plscr3a
XM_043239138.1 mRNA upstream 4041 10918773 ~ 10922782 (+) True phf23a
XM_043238679.1 mRNA upstream 18466 10904934 ~ 10908357 (+) True si:ch211-137i24.12
XM_043240755.1 mRNA upstream 52731 10870338 ~ 10874092 (+) True znf703
XM_043240167.1 mRNA upstream 158192 10762441 ~ 10768631 (+) True tia1l
XM_043239762.1 mRNA downstream 792 10934545 ~ 10941643 (+) True eif4a1b
XM_043238332.1 mRNA downstream 12362 10946115 ~ 10948415 (+) True sox19a
XM_043239667.1 mRNA downstream 26587 10960340 ~ 10963604 (+) True tm4sf21a
XM_043239664.1 mRNA downstream 35749 10969502 ~ 10972314 (+) True mrps31
XM_043238571.1 mRNA downstream 47834 10981587 ~ 10986048 (+) False capga
TU51709 other upstream 195771 10729118 ~ 10731052 (+) False osbp2b
TU51450 other upstream 808697 10064217 ~ 10118126 (+) True fam219ab
TU51316 other upstream 1127465 9796390 ~ 9799358 (+) True si:ch211-102c2.4
TU50789 other upstream 2055305 8867513 ~ 8871518 (+) False man1b1b
XR_006251032.1 other upstream 2622672 8289720 ~ 8304151 (+) False snx19a
XR_006251083.1 other downstream 112727 11046480 ~ 11062314 (+) False map7d2a
XR_006251021.1 other downstream 990475 11924228 ~ 11942072 (+) False smarca1
TU52593 other downstream 1315385 12249138 ~ 12255672 (+) True G35720
TU52594 other downstream 1315385 12249138 ~ 12255672 (+) False G35720
TU52818 other downstream 1580323 12514076 ~ 12516108 (+) False si:ch211-225b11.4

Expression Profile