RNA id: XR_006250928.1


Basic Information

Item Value
RNA id XR_006250928.1
length 572
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id LOC122344810
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 27115967 ~ 27146962 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACACTTTCTAGATGACCGAAGGAATTTTAGGAAACGggatgcattttatgcattttctgCAGGGAAAAGGTCATGTTTGGGTGAGCAGCTCGCACGAAATACACTCTTCCTGTTCTTCACTTCCCTCCTCCAGAGGTTCTCGTTCTCAGCTCCTGAAGGATTAGGACCTCACTGTAAGGACCAGGAACAGATCAAGATGTCTCAAGAATCCTCCCAGACCTTTGTGTCATTACGTCAAGAGAAACGGGAATCAGATCTGAACTGATACTGAGTTCTATTAATAGATGGATGTTATGTTAATACATGCAGTAAAATGCAGTCTTTTTGATTCGGTTCAATATGAAAAGATTTATTCCACAGCGATAAAGCATATGCAAGGACATGTgcattatgaatgtaatttttgtaaagatgtttagattgtaaaatgttaatacaattcaaatgtgaaaattatgctGTATATTGTAGCGTGTAATCAATCTAAAATCTACTTATTCCCATAAACCATTCaacaaataattaagaaatacaaaaaacatcCATGAATCCAGCACAACTAGACAACTAC

Function

GO:

id name namespace
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU58800 lncRNA downstream 8582 27099815 ~ 27107385 (-) True LOC122345426
TU58799 lncRNA downstream 31181 27082001 ~ 27084786 (-) True G39738
TU58747 lncRNA downstream 232792 26876590 ~ 26883175 (-) True G39712
TU58749 lncRNA downstream 232792 26876590 ~ 26883175 (-) False G39712
XR_006250952.1 lncRNA downstream 742145 26372619 ~ 26373822 (-) True LOC122344941
TU59004 lncRNA upstream 41888 27188850 ~ 27189222 (-) True G39857
TU59020 lncRNA upstream 77925 27224887 ~ 27225562 (-) True G39870
TU59023 lncRNA upstream 85696 27232658 ~ 27234162 (-) True G39872
TU59040 lncRNA upstream 118327 27265289 ~ 27267229 (-) True G39888
TU59046 lncRNA upstream 138220 27285182 ~ 27286194 (-) True G39893
XM_043239545.1 mRNA downstream 8588 27099855 ~ 27107379 (-) False LOC122345426
XM_043239544.1 mRNA downstream 8590 27099855 ~ 27107377 (-) False LOC122345426
XM_043239542.1 mRNA downstream 16248 27095380 ~ 27099719 (-) True LOC122345424
XM_043239546.1 mRNA downstream 101469 27001647 ~ 27014498 (-) True LOC122345427
XM_043239543.1 mRNA downstream 114707 26997549 ~ 27001260 (-) True LOC122345425
XM_043238359.1 mRNA upstream 21303 27168265 ~ 27172894 (-) True LOC122344788
XM_043238698.1 mRNA upstream 130085 27277047 ~ 27280391 (-) True spaw
XM_043238696.1 mRNA upstream 141210 27288172 ~ 27293486 (-) True usp39
XM_043238697.1 mRNA upstream 155297 27302259 ~ 27308208 (-) True mat2ab
XM_043239463.1 mRNA upstream 165927 27312889 ~ 27334798 (-) True inpp5jb
unassigned_transcript_1081 other downstream 1004565 26111332 ~ 26111402 (-) True trnag-gcc_64
unassigned_transcript_1080 other downstream 1006397 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1079 other downstream 1014558 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1078 other downstream 1023971 26091926 ~ 26091996 (-) True trnag-gcc_61
unassigned_transcript_1077 other downstream 1026179 26089718 ~ 26089788 (-) True trnag-gcc_60
TU59072 other upstream 235959 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 742161 27889123 ~ 27895454 (-) True LOC122344874
TU59335 other upstream 1108866 28255828 ~ 28264704 (-) True G40080
TU59455 other upstream 2313623 29460585 ~ 29490204 (-) True G40182
XR_006251000.1 other upstream 2470037 29616999 ~ 29655061 (-) False eng

Expression Profile