RNA id: XR_006250964.1


Basic Information

Item Value
RNA id XR_006250964.1
length 423
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC122345027
representative False

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 21836313 ~ 21840100 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGAGGAGGAAGGAGACGTGAGCTGGACTCCGTGTCGAGAGGCACAGTGATGTTTTAGGGACTTTTTGTTATCGTATGCTTTGTGGCAGCCAGACTGAGTGCAGTTATAGCGCTTTCTCTTGTGCTGGGTCATCAGATCACTAGCACTGCCTGTTATCTAGAGAATCATTTATCATGACTGAATCACTCAGACGCCAGCATGTGAGATACTTACAGCTGATGCTGGTGTTTAAATGCTCTTTGACAGACGCTACAGAAATGAGGCCCATCCTGTCTGTGGATCAAGAGGTCTGTTGGTGGTGCCATGATGATGGTGGCATCTCTGGACACATTCTTGGACGATGAGAGCAGAGATGGACTCAAATCTGAAGGGTCTTTCATTTCCATTAACAGTTTCGTTGAGACGCTGTTAATCGGGGgaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU56972 lncRNA downstream 6581 21827615 ~ 21829732 (-) False G38510
TU56971 lncRNA downstream 6606 21821476 ~ 21829707 (-) False G38510
TU56981 lncRNA upstream 1754 21839359 ~ 21839673 (-) True G38515
TU56990 lncRNA upstream 29523 21867128 ~ 21867461 (-) True G38521
TU56992 lncRNA upstream 30010 21867615 ~ 21876585 (-) True G38523
TU57036 lncRNA upstream 171281 22008886 ~ 22010107 (-) True G38543
XR_006250931.1 lncRNA upstream 200755 22038360 ~ 22041267 (-) False LOC122344815
XM_043238736.1 mRNA downstream 1880 21829709 ~ 21834433 (-) True ehd2a
XM_043238735.1 mRNA downstream 1887 21829709 ~ 21834426 (-) False ehd2a
XM_043238734.1 mRNA downstream 1991 21829709 ~ 21834322 (-) False ehd2a
XM_043238742.1 mRNA downstream 6631 21827606 ~ 21829682 (-) False selenow1
XM_043238741.1 mRNA downstream 6631 21827606 ~ 21829682 (-) True selenow1
XM_043238729.1 mRNA upstream 4706 21842311 ~ 21849084 (-) True si:dkeyp-117b8.4
XM_043238730.1 mRNA upstream 4706 21842311 ~ 21847882 (-) False si:dkeyp-117b8.4
XM_043238737.1 mRNA upstream 14963 21852568 ~ 21856541 (-) True rsph4a
XM_043238738.1 mRNA upstream 14974 21852579 ~ 21856543 (-) False rsph4a
XM_043240559.1 mRNA upstream 19378 21856983 ~ 21867039 (-) False sympk
XR_006251046.1 other downstream 10208 21809013 ~ 21826105 (-) False akap10
TU56743 other downstream 216730 21612688 ~ 21619583 (-) True G38355
TU56747 other downstream 467265 21364238 ~ 21369048 (-) True G38359
TU56460 other downstream 900220 20929150 ~ 20936093 (-) False LOC122345723
TU56325 other downstream 1708923 20125589 ~ 20127390 (-) True G38140
XR_006250934.1 other upstream 40551 21878156 ~ 21884022 (-) False LOC122344823
XR_006250933.1 other upstream 40551 21878156 ~ 21884022 (-) False LOC122344823
XR_006251116.1 other upstream 122180 21959785 ~ 21959884 (-) True LOC122346220
XR_006251119.1 other upstream 202296 22039901 ~ 22040034 (-) True LOC122346224
TU57575 other upstream 1764639 23602244 ~ 23604733 (-) False LOC122345364

Expression Profile