RNA id: XR_006251035.1



Basic Information


Item Value
RNA id XR_006251035.1
length 814
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id LOC122345808
representative False

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 5142578 ~ 5169249 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCCGCCATTTTGGCGCAATTTCATAGCCGCGCTGAAAAACTTACTTAAAACCGACTTAATACCCCACAGAGAAAATGTTTGGGGTAACGAGGGAACGAAACTGAAGCCATTCGCCGATGATGATTTCGAAAAGGATATTTGAAGCGCAGGAGAGCAGCTTTGATGTACACAATGACTAAAGTTTTGGATGGTGCGCAAAAGACATACCATTACCCCGGTAATAGCAGCAGCACAAGGTACAAAAAGGAAAGATGGAACTGACATTATGCTGCTGTTTTAGAAGCACGGAGGAAAGCGTTGTGGCAGCGGAGAGAGAGCCAAATGCATGTTGGGAAGGAGATGGAATCATCTGGAGATGTCAGGCTTGGCTTCCTGCACAGAGGCAGCGTGTATGTCTTTGCCAGACTGGAGAATAAAGTCTTTGATCACTGCGTTGGGCAAAGCTTTACTGCCCCCTCTGCCAATTAGCAGGGCACTGCCCCAACTGCCTCAACTGCCTCATGCCAATCAGCTCTGCCAGTTTGGATGATTACAAGTCGGTGTGCCTCCACCCAGGTCAGAGAGGGCACGGGGACGTCACAGACTGTGgttctgtggaaaaaaataaggaGTGGGTCTCCTTTTTgctctctttgttttattttcagggtCTGTCCCAGCACTGCTGCAGCTTTTGTCAGCCCTCATTCAGGGACCGGCTAGAAAAACATAACCACTATGTTAAGACTGTAGGTCATTCCAATTAGACCAGTGTACTTTTTTATCTGAACTATACTAGTCAGATTGGAATATTGAAGTTTTTGAAGCATCTTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU49076 lncRNA downstream 66544 5075761 ~ 5076034 (-) True G33334
TU49075 lncRNA downstream 88675 5034111 ~ 5053903 (-) True G33333
TU49073 lncRNA downstream 108624 5032563 ~ 5033954 (-) True G33332
TU49071 lncRNA downstream 114763 5024945 ~ 5027815 (-) True G33330
TU49044 lncRNA downstream 226827 4913881 ~ 4915751 (-) True G33310
XR_006250957.1 lncRNA upstream 404915 5574164 ~ 5597629 (-) True LOC122344984
TU49160 lncRNA upstream 412894 5582143 ~ 5584600 (-) False LOC122344984
TU49165 lncRNA upstream 418796 5588045 ~ 5589905 (-) False LOC122344983
TU49166 lncRNA upstream 418796 5588045 ~ 5595174 (-) True LOC122344983
XR_006250956.1 lncRNA upstream 419678 5588927 ~ 5595020 (-) False LOC122344983
XM_043240689.1 mRNA downstream 128637 5008086 ~ 5013941 (-) True rnf215
XM_043240688.1 mRNA downstream 141522 4949084 ~ 5001056 (-) True zdhhc8b
XM_043239098.1 mRNA downstream 194625 4927327 ~ 4947953 (-) True si:dkey-112e17.1
XM_043238165.1 mRNA downstream 584735 4487841 ~ 4557843 (-) True galnt9
XM_043240589.1 mRNA upstream 463 5169712 ~ 5333504 (-) True si:dkey-215k6.1
XM_043240048.1 mRNA upstream 182197 5351446 ~ 5380269 (-) True aacs
XM_043240187.1 mRNA upstream 214306 5383555 ~ 5388325 (-) True LOC122345752
XM_043238772.1 mRNA upstream 219570 5388819 ~ 5393629 (-) False poli
XM_043238771.1 mRNA upstream 219570 5388819 ~ 5393629 (-) True poli
TU48850 other downstream 519520 4622490 ~ 4623058 (-) True G33175
TU48820 other downstream 949497 4144927 ~ 4193081 (-) True LOC122346168
TU48822 other downstream 949497 4144927 ~ 4193081 (-) False LOC122346168
TU48823 other downstream 949497 4144927 ~ 4193081 (-) False LOC122346168
TU48804 other downstream 1248103 3885550 ~ 3894475 (-) False piwil2
XR_006251120.1 other upstream 262015 5431264 ~ 5431394 (-) True LOC122346225
unassigned_transcript_954 other upstream 787050 5956299 ~ 5956371 (-) True trnak-uuu_104
TU49743 other upstream 1654922 6824171 ~ 6826182 (-) True G33758
XR_006251011.1 other upstream 1754181 6923430 ~ 6943192 (-) True usp20
XR_006251012.1 other upstream 1761623 6930872 ~ 6943203 (-) False usp20

Expression Profile