RNA id: XR_006251055.1


Basic Information

Item Value
RNA id XR_006251055.1
length 2794
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC122345905
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 12880061 ~ 12884157 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGGCTTTATCTAACAGCAGAGTCACCATacgtcatttatttaaattaaatgacctAAAATGTCTGTggcttggttttgtttttcaatcaaTGTGCTTTATCTTCAGTTTTGTTCTGAATATGAACAAAGcatttacgggtttggaacgacatggggGTTGAGTTTGCTTCTGTGGTGAGAACTGACAGAGGCCCTCTTTGTTCTTCTTCTGTGAAACTGGGGCTTGTCATTTCATGCTTCACATGCTGATAGGAGAGGGAGGAAGTCACCAGGGAGCTGTTTCAGAGCTAAAGGATGCTGGGACTGTGGTATTCAGCCCACACTTGACTCACTGACCTGCATTACTGACCGCGTTCGGGTCAGGAAGTCCAAATCAAAGACACCAAATAGCAACAATTCCTGGGGAGGGAGAATGGGATTGCATGTGCTTGTGGGCATGAGAGAGATCATTCTCAGCATTCTCAGCACGGAATCTACCGATTCATTCAACTTCTGTGTTAGTGCACGTTTCAGTAAAATGTACTTATGAAGTAGTAAAAACTGAAGGAATATTTTTCTTCCCATTATATAACTGGAATGTGAATAAAAGCTGAACTGATCTTACGCACTTAGGAGCTTAATAATAATGACCAATCAacagtttacattaaaaacaaatgctctTATGCTAATgtctcaaaataatttaaagactTTGTAGAACTGAAGTGTTTAGATATAAAAAGTCAGTTCCACCATTGATTTACACTGGGCTTACATACATTGATAAAAGAACAGCAACAATTTTGTTAAAGGCGtggcttagttttttgactgaATCCAGTAATTAATACAGATTACATACAAGATGCATATTCAAGACACCACTAATGATTGTTTACTTCCTTTCCAGTTCAGTAATTTCCCATGACAAATTTAAAATCAACCTCTCTGAAAACCTAATGAAAGGCAACACTTTTTGGCAGGCTGTTGAACGGTACTTCACGCTTTTTGAGCATTGGACATTTAAAAAGAGCTTTCAATGCAGTGCGTTTTCCTCTAAGATCACAAATTGAGATCCACAAAAACTGACAGGTCTCAGCAATTATGATTCACCAAGAGGCTGAAGTTTCCATTTCTTATGCTGTATTTTCAAATGCTCTTTGACGTTTTGTGAAAATGATAAGGATCTGAGGCAGGTGTTGTCAATGATTGCAGTTCACTTTGTTTAGCTGGGTCGTCTGATTTGAATTCAGACTGAGGTCTTTTATCATTCAGAAGACCGTGACTGATTTGAAATCCAATGCATATTGTATGTGGAAGATGAAGATTGTAAAATGCACCTccatatgtatgtaatataaaaaatgtattacatttcatggatgttaagaaatatttattggtGGTGCATTTAGTCAGTAAATAGGTAATTCTGTAGAGGTAGGGATAGACCACAAAGTGTTATCCCCTCCATCCCCCCCTAATCACACACTGTACATATCTACATATATCTGATGGTCAGAAGGTTAATAGGTCATCTATAAAAATCCTCTGTAGGTCAATGTTATGTGACCCCAGAGCTAAAAATGAGGTagaaaaaatgtacagtttaagTCACCTAATACAGTAGCCTACACTGTGACAAgaatatacaatacaaaatactCACTCTGGCAACCATTGTTACAGTTTGTCATACACATGACAGCTATGTTGCTTCACAACCATAAACAACGACTgacaacataatatatattcattttaacagcCAGCAGTACACAATTATTTCAGGTATCTGTAAAACAGCATACTACAGAGCATCTGTGTGGGTGGCTGAAAGAAATTATTCCACAGGGAGAATTTATAGATTGACCTCTTGAACCGAAACCATGTGGCTTCTAACATATTGTCACACAGCTCTGTTTGGAAGCGCTCAGAAAGAGTCTATGTTTACCTAGGTATGCAGCCagcagaataaaaatgaattgctgTGAAATTTTGGTTTACAAATAGACTCTTTAACATGcatgaaatgaatatttttttctagcaATGTTCAGTATACCAGTCTGCCAGATGGAGGAGAAAGGAATAGTATGTGAACATGCTAAATGTAATCGGCTGAAAAAATGAGGGGAAACACCTGTAAGCACTTCctagtaataaatgaatagaatGTGTTCCACAATAACTGTAAAGCcattaatgtatgttttaacAGTAATTCATGTGCTGGATATAAAACAGGACCATAACTGATATTGTGAGACATGTAatgtattatgcaaattaatGCAATGGCTGGTGTAGTATAAATAGGAACGGTATGTGCTTCTGTGACACTTACAGATAAGGAACATTATTTGAGAGTGATAACACAAAACAGATGGCAAACTGAACTCCCTCATGCTGttagtgcatgtgtgtgtgtgtgtgtttgaaacttCAATGATAAAGGTGGTAGCTGTGAGATAAATCCAAAGTCACCTTTTAGGCATTTCCCAGGAGTATCTCTATTTCTTTCGTTAATTCTATGTTTATTGCTCATTTCatagaaaaaaaccccactattctcttctttctgttttgatttgttcCTCCCCCCCTATCACTTGTTTATTAAACCAGCCGTGTGATTATattgtgtatgtgcatgtgtgtgagggagCAAAACAAAGAGGGAAGGAGCAAATAGTAATAgactgttaaaaaagaaaaggaaaaaaaaagcttttgttttggcTTCATGCATAATTTTAGGAACTTGGTAAGATCCCAGGCTTTCATAGTTTGTGCTTTGCAGAAGGAACa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU53008 lncRNA downstream 240684 12637190 ~ 12639377 (-) True G35966
XR_006250996.1 lncRNA downstream 273123 12602216 ~ 12606938 (-) True LOC122345380
TU52974 lncRNA downstream 342259 12532390 ~ 12537802 (-) True G35949
TU52941 lncRNA downstream 364511 12506761 ~ 12515550 (-) False G35928
TU52943 lncRNA downstream 370065 12463906 ~ 12509996 (-) True G35928
TU53066 lncRNA upstream 29469 12913626 ~ 12916013 (-) True G36004
TU53068 lncRNA upstream 29469 12913626 ~ 12916814 (-) False G36004
TU53073 lncRNA upstream 40586 12924743 ~ 12926462 (-) True G36009
TU53076 lncRNA upstream 49314 12933471 ~ 12933779 (-) True G36012
TU53124 lncRNA upstream 169976 13054133 ~ 13054857 (-) False G36047
XM_043240130.1 mRNA downstream 16363 12844251 ~ 12863698 (-) True map1b
XM_043238396.1 mRNA downstream 39125 12835956 ~ 12840936 (-) True ptcd2
XM_043238172.1 mRNA downstream 47323 12831666 ~ 12832738 (-) True isg15
XM_043240732.1 mRNA downstream 60383 12808510 ~ 12819678 (-) False svopa
XM_043240731.1 mRNA downstream 60388 12808510 ~ 12819673 (-) True svopa
XM_043239055.1 mRNA upstream 10427 12894584 ~ 12911763 (-) False ttc33
XM_043239056.1 mRNA upstream 10427 12894584 ~ 12911744 (-) False ttc33
XM_043239054.1 mRNA upstream 10427 12894584 ~ 12911744 (-) True ttc33
XM_043240166.1 mRNA upstream 59168 12943325 ~ 12954845 (-) True eda2r
XM_043239671.1 mRNA upstream 136189 13020346 ~ 13050778 (-) False ophn1
TU52956 other downstream 374103 12501914 ~ 12505958 (-) True G35936
TU52745 other downstream 560376 12317803 ~ 12319685 (-) True G35825
TU52701 other downstream 710734 12165410 ~ 12169327 (-) False sh2d1aa
TU52507 other downstream 1064251 11801314 ~ 11815810 (-) False msna
TU52344 other downstream 1227434 11583780 ~ 11652627 (-) True G35554
TU53125 other upstream 169687 13053844 ~ 13054857 (-) True G36047
unassigned_transcript_955 other upstream 491472 13375629 ~ 13375700 (-) True trnap-agg_13
TU53374 other upstream 694904 13579061 ~ 13582241 (-) True h3f3c
XR_006250976.1 other upstream 774920 13659077 ~ 13699226 (-) False lrch2
XR_006250977.1 other upstream 775817 13659974 ~ 13699226 (-) False lrch2

Expression Profile