RNA id: XR_006251105.1


Basic Information

Item Value
RNA id XR_006251105.1
length 2280
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id LOC122346170
representative True

Chromosome Information

Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 1762921 ~ 1765407 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttaacgcttaCATTTAAATAGGCCTATACATTAATCACTGCTATGAGAATGAAACCGTTTGATGCTATGCATTCGTAACCAGCAATGCTTCCATCTCCCTGTAACTCCCCACTGAACAGAGCTGGTAGGTGTGTAAccatatatttagatttttatttataatgaaggAGCTCTTCCAGAAGGCAGAAGGAAGGGATGATTCTCTTGTTTGAGCCAGATCGGTGGGGGATGGGACTATTTGTAAGGAATGTAGGGGGCAGGTCCCTTTCCAAGAGGGGAGGAAAGGAAAGGGAGGGAATGCGAGGAGGGGAGGTCGCCCATAGTGACATTTTACTCTTGGTCAGTATCTGCAAGGTTATGCAAGTTGAACTTTTTGGTTGTCTCATCAAAAGACTGGACATCTGGCCAAAACGAAGTGTAATCTATCGGTTGATACGTAGGGAGGTCAGCGTGTGTGAATGCACTGGCGCAATACATCCTGATTTATATGCGTGCAGAAGTGATATGTGTCACCCTGGCGACTcgcatatttttaaagcaaatatgcTGCATGCGATtcgtgcaaaaataaatacaatttcttaCACGATGCGCGCGGAGTTATTTCGGTATTTATTCTTGTGAGTATTGTTTTTTTCGTGTTTGGGGTTTAACATCTATGTGGTGTAACTGCCGAGCTTGtaaaaaccttaatttaaagggaaaaaaaatattgagtgaAAAAACAATATTGACATAAGACaatatatggattttttttacttaatacaTCTAATATTTACAGTCGCGTGTTCTAACAAACAATCTGCAACCATTTTGTTGTCATATGACTCGCCTGAGtctagattattttattataaaaccatCCTCTTATGAAAAAGCACTCTTCATTCACTGCTTCAAATGAGGTATAGGGACTTCGTCACAGCGCAACTTTATGATATTTATGACATTGCAAAAAATCTTAACAGTTGTGCAAATTCACGTGAATCCTTTTTAAAACTTCAACTTGTATTGTTTGCACTGGTCCGTTCAAAAAAACCCGATGCACGACAATTTGGCACGCGCGTTTTAAACTTGACAATTAAAAGACTTATTTTTATCATCCGGTGCATTTGTCGTTGACCCGTATGTACAGAGGCTCCACAGCAGAAGGTAAGCTGGAGACTCACCGGTCTGAACTGGGTGTATGAGGAATGTTGCGCTAAATACCGCAACGCGCATGCGCAGCGCATTCACAGGCCACTATATAGCATACTGAGGCCTACAGCTCCTCCGTTCTCATGATCCTGGTTCAGCTCTCAGCTAGTGGGCTTTGAAGCTTCACGTGAGGATTGGGCGTCGTGTTCTCGACCTGTTGTCGTGATTCAACATTTTGACTGCAAGTTAACTGCACGGAACCTGATTGGTAAATTGTTTAACGTGTTTTATTACCGAGGGGGACAAGTAAGATCATGCATGTGAGTTCAATGTGAAATTcccaaaggagaaaaaaaaaacatcctgttGGAGCATGTCGTTAACTCCAAGGCAGAAGCTGGTATGCTTGGAATTGCAGAGCACCAAGACTGCTTTTGGACGCAGATAACCAAAGGGCCTACAATATGCTTTCCACTCTGTTTCTCATATTTGAATGCCTGAGTCAGTCCACCAGCGTGGCTTCAAAGGAATGCGTCTTTATTGatagcatgcatgcatgtattggTATTAGATGATTGTTTTTAAGTAGGCTGTTTAAAACGCCAGATGTGCTAAAAATGacgtttttgaaaaaagtcacatttgttATTCTAAATGTTCATGGTGATTTCTGTTGTATGCTTAAGGGTGAAAGCGGTTAAACTCAATGTAAAAACCCTCAACGTTTTTGCtctattaaacacattttatacgAAGCGTGTTGTTTAGCAGCAAATAAACTGCACAGAATTCTgcttaaaatgaattttgagTTGCATTTTGCCATTGACTCGGTTCGTTTCTAGGCTGTGTAGGGTCAGATGTCACAAAGAGGTTTACGTATCGTGTGTAGTAGAGCAGGAACCATTTTCAGTCTCACCATTTAGGCATTTAAACCCCTAGATATTATGTTTTGCTCAGCCGCGCTATCTTTTTGCTAAAGTGCTGTGATTTATCATGCTTAATAAATCTTGCAGGCGAGACCCTATCAATATTGCCTCTGCTTTTTTCACTGTTTATGGAGTAGTGCAATATTGCTTATAGGGTCTTGACTTTAAGGGTAATCTGCAATTTCAGGAACGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47957 lncRNA upstream 639 1762005 ~ 1762282 (+) True G32540
TU47956 lncRNA upstream 950 1761564 ~ 1761971 (+) True G32539
TU47955 lncRNA upstream 2691 1759994 ~ 1760230 (+) True G32538
TU47922 lncRNA upstream 56034 1705974 ~ 1706887 (+) True G32513
XR_006251038.1 lncRNA upstream 65247 1690109 ~ 1697674 (+) True LOC122345819
TU47959 lncRNA downstream 1189 1766596 ~ 1766890 (+) True G32542
TU47971 lncRNA downstream 19994 1785401 ~ 1785642 (+) True G32552
TU48082 lncRNA downstream 136051 1901458 ~ 1905499 (+) True LOC122346050
TU48091 lncRNA downstream 192711 1958118 ~ 1958584 (+) True G32643
TU48092 lncRNA downstream 200772 1966179 ~ 1966378 (+) True G32644
XM_043238200.1 mRNA upstream 17750 1743315 ~ 1745171 (+) True LOC122344671
XM_043239928.1 mRNA upstream 110505 1623097 ~ 1652416 (+) True ppil2
XM_043239929.1 mRNA upstream 140594 1616062 ~ 1622327 (+) True gal3st1a
XM_043240467.1 mRNA upstream 150373 1603813 ~ 1612548 (+) True pes
XM_043240652.1 mRNA upstream 165193 1579923 ~ 1597728 (+) True pole
XM_043239639.1 mRNA downstream 8558 1773965 ~ 1779426 (+) False ydjc
XM_043239638.1 mRNA downstream 8832 1774239 ~ 1779426 (+) True ydjc
XM_043240536.1 mRNA downstream 26421 1791828 ~ 1793266 (+) True ccl19a.2
XM_043240535.1 mRNA downstream 29127 1794534 ~ 1796438 (+) True ccl19a.1
XM_043240534.1 mRNA downstream 31427 1796834 ~ 1806041 (+) True tctn2
TU47619 other upstream 647516 1112496 ~ 1115405 (+) False selenoe
TU47584 other upstream 705768 1055193 ~ 1057153 (+) True G32277
TU47246 other upstream 1311556 450192 ~ 451365 (+) False tal2
XR_006251007.1 other upstream 1331456 419246 ~ 431465 (+) True susd1
TU47965 other downstream 26453 1791860 ~ 1793243 (+) False ccl19a.2
TU48046 other downstream 57247 1822654 ~ 1826114 (+) True G32611
TU48056 other downstream 69741 1835148 ~ 1843013 (+) True G32620
TU48080 other downstream 136051 1901458 ~ 1905288 (+) False LOC122346050
TU48087 other downstream 245004 2010411 ~ 2018459 (+) False LOC122345711

Expression Profile