RNA id: unassigned_transcript_1048



Basic Information


Item Value
RNA id unassigned_transcript_1048
length 71
RNA type tRNA
GC content 0.59
exon number 1
gene id trnag-gcc_50
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 26021169 ~ 26021239 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gcattggtggttcagtggtagaattctcgcctgccacgcgggagacccgggttcgattcccagccaatgca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU58520 lncRNA downstream 237578 25782979 ~ 25783591 (-) True G39574
TU58518 lncRNA downstream 292699 25728237 ~ 25728470 (-) True G39572
TU58435 lncRNA downstream 438155 25582339 ~ 25583014 (-) True G39514
TU58427 lncRNA downstream 461951 25558875 ~ 25559218 (-) True G39506
TU58424 lncRNA downstream 463647 25557296 ~ 25557522 (-) True G39503
TU58525 lncRNA upstream 97235 26118474 ~ 26119083 (-) True G39579
TU58531 lncRNA upstream 132226 26153465 ~ 26153703 (-) True G39585
XR_006250952.1 lncRNA upstream 351380 26372619 ~ 26373822 (-) True LOC122344941
TU58747 lncRNA upstream 855351 26876590 ~ 26883175 (-) True G39712
TU58749 lncRNA upstream 855351 26876590 ~ 26883175 (-) False G39712
XM_043240553.1 mRNA downstream 312490 25655507 ~ 25708679 (-) False kntc1
XM_043240554.1 mRNA downstream 312490 25655507 ~ 25708679 (-) False kntc1
XM_043240552.1 mRNA downstream 312490 25655507 ~ 25708679 (-) True kntc1
XM_043240061.1 mRNA downstream 370161 25618111 ~ 25651008 (-) True hip1rb
XM_043238566.1 mRNA downstream 452555 25563039 ~ 25568614 (-) False LOC122344921
XM_043238251.1 mRNA upstream 511096 26532335 ~ 26544513 (-) True LOC122344705
XM_043238939.1 mRNA upstream 532467 26553706 ~ 26566423 (-) True LOC122345107
XM_043240170.1 mRNA upstream 569686 26590925 ~ 26610395 (-) True LOC122345741
XM_043238546.1 mRNA upstream 593903 26615142 ~ 26625016 (-) False kat5b
XM_043238543.1 mRNA upstream 593903 26615142 ~ 26625008 (-) True kat5b
unassigned_transcript_1040 other downstream 8681 26012418 ~ 26012488 (-) True trnag-gcc_49
unassigned_transcript_1037 other downstream 21382 25999717 ~ 25999787 (-) True trnag-gcc_48
unassigned_transcript_1034 other downstream 26946 25994153 ~ 25994223 (-) True trnag-gcc_47
unassigned_transcript_1027 other downstream 34845 25986254 ~ 25986324 (-) True trnag-gcc_46
unassigned_transcript_1022 other downstream 40484 25980615 ~ 25980685 (-) True trnag-gcc_45
unassigned_transcript_1053 other upstream 4365 26025604 ~ 26025673 (-) True trnag-gcc_51
unassigned_transcript_1056 other upstream 6560 26027799 ~ 26027868 (-) True trnag-gcc_52
unassigned_transcript_1061 other upstream 10956 26032195 ~ 26032266 (-) True trnag-gcc_53
unassigned_transcript_1064 other upstream 13181 26034420 ~ 26034490 (-) True trnag-gcc_54
unassigned_transcript_1067 other upstream 15367 26036606 ~ 26036676 (-) True trnag-gcc_55