RNA id: unassigned_transcript_1078



Basic Information


Item Value
RNA id unassigned_transcript_1078
length 71
RNA type tRNA
GC content 0.63
exon number 1
gene id trnag-gcc_61
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 26091926 ~ 26091996 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gcattggtggttcagtggtagaattctcgcctgccgcgcgggagacccgggttcgattcccggccgtagca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU58520 lncRNA downstream 308335 25782979 ~ 25783591 (-) True G39574
TU58518 lncRNA downstream 363456 25728237 ~ 25728470 (-) True G39572
TU58435 lncRNA downstream 508912 25582339 ~ 25583014 (-) True G39514
TU58427 lncRNA downstream 532708 25558875 ~ 25559218 (-) True G39506
TU58424 lncRNA downstream 534404 25557296 ~ 25557522 (-) True G39503
TU58525 lncRNA upstream 26478 26118474 ~ 26119083 (-) True G39579
TU58531 lncRNA upstream 61469 26153465 ~ 26153703 (-) True G39585
XR_006250952.1 lncRNA upstream 280623 26372619 ~ 26373822 (-) True LOC122344941
TU58747 lncRNA upstream 784594 26876590 ~ 26883175 (-) True G39712
TU58749 lncRNA upstream 784594 26876590 ~ 26883175 (-) False G39712
XM_043240553.1 mRNA downstream 383247 25655507 ~ 25708679 (-) False kntc1
XM_043240554.1 mRNA downstream 383247 25655507 ~ 25708679 (-) False kntc1
XM_043240552.1 mRNA downstream 383247 25655507 ~ 25708679 (-) True kntc1
XM_043240061.1 mRNA downstream 440918 25618111 ~ 25651008 (-) True hip1rb
XM_043238566.1 mRNA downstream 523312 25563039 ~ 25568614 (-) False LOC122344921
XM_043238251.1 mRNA upstream 440339 26532335 ~ 26544513 (-) True LOC122344705
XM_043238939.1 mRNA upstream 461710 26553706 ~ 26566423 (-) True LOC122345107
XM_043240170.1 mRNA upstream 498929 26590925 ~ 26610395 (-) True LOC122345741
XM_043238546.1 mRNA upstream 523146 26615142 ~ 26625016 (-) False kat5b
XM_043238543.1 mRNA upstream 523146 26615142 ~ 26625008 (-) True kat5b
unassigned_transcript_1077 other downstream 2138 26089718 ~ 26089788 (-) True trnag-gcc_60
unassigned_transcript_1076 other downstream 11733 26080123 ~ 26080193 (-) True trnag-gcc_59
unassigned_transcript_1075 other downstream 33803 26058053 ~ 26058123 (-) True trnag-gcc_58
unassigned_transcript_1074 other downstream 41177 26050679 ~ 26050749 (-) True trnag-gcc_57
unassigned_transcript_1070 other downstream 49596 26042260 ~ 26042330 (-) True trnag-gcc_56
unassigned_transcript_1079 other upstream 9343 26101339 ~ 26101409 (-) True trnag-gcc_62
unassigned_transcript_1080 other upstream 17504 26109500 ~ 26109570 (-) True trnag-gcc_63
unassigned_transcript_1081 other upstream 19336 26111332 ~ 26111402 (-) True trnag-gcc_64
TU59072 other upstream 1290925 27382921 ~ 27398720 (-) True isca1
TU59237 other upstream 1797127 27889123 ~ 27895454 (-) True LOC122344874