RNA id: unassigned_transcript_962



Basic Information


Item Value
RNA id unassigned_transcript_962
length 73
RNA type tRNA
GC content 0.62
exon number 1
gene id trnak-cuu_5
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 24924148 ~ 24924220 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GCCCggctagctcagtcggtagagcatgagACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU58278 lncRNA downstream 11209 24912646 ~ 24912939 (-) True G39365
TU58270 lncRNA downstream 60957 24861943 ~ 24863191 (-) True G39357
TU58269 lncRNA downstream 77785 24840745 ~ 24846363 (-) True G39356
TU58223 lncRNA downstream 165521 24754204 ~ 24758627 (-) True LOC122345923
TU58257 lncRNA downstream 170826 24753082 ~ 24753322 (-) True G39347
TU58279 lncRNA upstream 487 24924707 ~ 24924947 (-) True G39366
TU58288 lncRNA upstream 92341 25016561 ~ 25016841 (-) True G39375
TU58290 lncRNA upstream 95029 25019249 ~ 25019491 (-) True G39377
TU58301 lncRNA upstream 126961 25051181 ~ 25051518 (-) True G39384
TU58318 lncRNA upstream 251088 25175308 ~ 25176349 (-) True G39401
XM_043240627.1 mRNA downstream 20859 24814609 ~ 24903289 (-) False LOC122346005
XM_043240626.1 mRNA downstream 20859 24814609 ~ 24903289 (-) True LOC122346005
XM_043240635.1 mRNA downstream 141500 24759478 ~ 24782648 (-) False taf6
XM_043240636.1 mRNA downstream 141500 24759478 ~ 24782648 (-) True taf6
XM_043240457.1 mRNA downstream 165480 24754202 ~ 24758668 (-) False LOC122345923
XM_043239176.1 mRNA upstream 307015 25231235 ~ 25263128 (-) False zfpl1
XM_043239175.1 mRNA upstream 307015 25231235 ~ 25263124 (-) True zfpl1
XM_043240265.1 mRNA upstream 379255 25303475 ~ 25446662 (-) False LOC122345796
XM_043240264.1 mRNA upstream 379255 25303475 ~ 25446661 (-) True LOC122345796
XM_043240267.1 mRNA upstream 379255 25303475 ~ 25446660 (-) False LOC122345796
unassigned_transcript_961 other downstream 6072 24918005 ~ 24918076 (-) True trnak-cuu_4
unassigned_transcript_960 other downstream 6255 24917820 ~ 24917893 (-) True trnan-guu_1
XR_006250980.1 other downstream 330032 24588028 ~ 24594116 (-) False anapc2
TU57904 other downstream 723652 24197705 ~ 24200496 (-) True G39113
TU57720 other downstream 1036468 23887303 ~ 23887680 (-) True G38973
unassigned_transcript_963 other upstream 2760 24926980 ~ 24927051 (-) True trnak-cuu_6
unassigned_transcript_964 other upstream 8686 24932906 ~ 24932978 (-) True trnak-cuu_7
unassigned_transcript_967 other upstream 67805 24992025 ~ 24992095 (-) True trnag-gcc_22
unassigned_transcript_970 other upstream 70942 24995162 ~ 24995232 (-) True trnag-gcc_23
TU58333 other upstream 357666 25281886 ~ 25282286 (-) True G39413