RNA id: unassigned_transcript_992



Basic Information


Item Value
RNA id unassigned_transcript_992
length 83
RNA type tRNA
GC content 0.60
exon number 1
gene id trnas-cga_3
representative True

Chromosome Information


Item Value
chromosome id NC_056703.1
NCBI id CM032072.1
chromosome length 32833783
location 25896139 ~ 25896221 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gtcaggatggccgaAGCGGTCTAAAGCGCTGCGTTCGAGTCGCAGATCTCCTctgggcgtgggttcgaatcccacttctgacg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU58520 lncRNA downstream 112548 25782979 ~ 25783591 (-) True G39574
TU58518 lncRNA downstream 167669 25728237 ~ 25728470 (-) True G39572
TU58435 lncRNA downstream 313125 25582339 ~ 25583014 (-) True G39514
TU58427 lncRNA downstream 336921 25558875 ~ 25559218 (-) True G39506
TU58424 lncRNA downstream 338617 25557296 ~ 25557522 (-) True G39503
TU58525 lncRNA upstream 222253 26118474 ~ 26119083 (-) True G39579
TU58531 lncRNA upstream 257244 26153465 ~ 26153703 (-) True G39585
XR_006250952.1 lncRNA upstream 476398 26372619 ~ 26373822 (-) True LOC122344941
TU58747 lncRNA upstream 980369 26876590 ~ 26883175 (-) True G39712
TU58749 lncRNA upstream 980369 26876590 ~ 26883175 (-) False G39712
XM_043240553.1 mRNA downstream 187460 25655507 ~ 25708679 (-) False kntc1
XM_043240554.1 mRNA downstream 187460 25655507 ~ 25708679 (-) False kntc1
XM_043240552.1 mRNA downstream 187460 25655507 ~ 25708679 (-) True kntc1
XM_043240061.1 mRNA downstream 245131 25618111 ~ 25651008 (-) True hip1rb
XM_043238566.1 mRNA downstream 327525 25563039 ~ 25568614 (-) False LOC122344921
XM_043238251.1 mRNA upstream 636114 26532335 ~ 26544513 (-) True LOC122344705
XM_043238939.1 mRNA upstream 657485 26553706 ~ 26566423 (-) True LOC122345107
XM_043240170.1 mRNA upstream 694704 26590925 ~ 26610395 (-) True LOC122345741
XM_043238546.1 mRNA upstream 718921 26615142 ~ 26625016 (-) False kat5b
XM_043238543.1 mRNA upstream 718921 26615142 ~ 26625008 (-) True kat5b
unassigned_transcript_991 other downstream 3730 25892329 ~ 25892409 (-) True trnal-cag_29
unassigned_transcript_990 other downstream 5629 25890428 ~ 25890510 (-) True trnal-cag_28
unassigned_transcript_989 other downstream 7543 25888514 ~ 25888596 (-) True trnal-aag_30
unassigned_transcript_988 other downstream 8698 25887358 ~ 25887441 (-) True trnal-cag_27
unassigned_transcript_987 other downstream 18384 25877671 ~ 25877755 (-) True trnal-cag_26
unassigned_transcript_1008 other upstream 72823 25969044 ~ 25969114 (-) True trnag-gcc_41
unassigned_transcript_1011 other upstream 76669 25972890 ~ 25972960 (-) True trnag-gcc_42
unassigned_transcript_1016 other upstream 80464 25976685 ~ 25976755 (-) True trnag-gcc_43
unassigned_transcript_1019 other upstream 82601 25978822 ~ 25978892 (-) True trnag-gcc_44
unassigned_transcript_1022 other upstream 84394 25980615 ~ 25980685 (-) True trnag-gcc_45