RNA id: TU63621


Basic Information

Item Value
RNA id TU63621
length 230
lncRNA type read_through
GC content 0.50
exon number 2
gene id G42955
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 5133802 ~ 5228971 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCATCACAAGTCTCcactctttttcctttctttgcctcttcctcctcctcatcttcatcctcatccCCTGCATCTTCACTgtcctcatcttcatcatcgtcgtcatcaCTATCCCCAGCCTTCCTCTTGCGCTTGTGACCAATGGAGGAGCTGCCAGCAGCCTGAGGCTCCTCCCCTCCGGTGATTGCTTCACGTTTCCCTGTCCGTTTAGCGTAGATTgttttcatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63300 lncRNA downstream 247486 4882787 ~ 4886316 (-) True sumo3a
XR_006251189.1 lncRNA downstream 252409 4871246 ~ 4881393 (-) False LOC122346990
TU63308 lncRNA downstream 252415 4867127 ~ 4881387 (-) False LOC122346990
TU63306 lncRNA downstream 252415 4871127 ~ 4881387 (-) True LOC122346990
TU63120 lncRNA downstream 411180 4722036 ~ 4722622 (-) False dnah9l
XR_006251160.1 lncRNA upstream 7850 5236821 ~ 5238695 (-) True LOC122346705
TU63733 lncRNA upstream 425250 5654221 ~ 5654958 (-) True G43019
XR_006251149.1 lncRNA upstream 516468 5745439 ~ 5747394 (-) True LOC122346635
TU63805 lncRNA upstream 518795 5747766 ~ 5755464 (-) True LOC122346634
XR_006251148.1 lncRNA upstream 518906 5747877 ~ 5754995 (-) False LOC122346634
XM_043242287.1 mRNA downstream 58723 5033954 ~ 5075079 (-) False gulp1b
XM_043242288.1 mRNA downstream 58723 5033954 ~ 5075079 (-) False gulp1b
XM_043242283.1 mRNA downstream 58723 5033954 ~ 5075079 (-) False gulp1b
XM_043242284.1 mRNA downstream 58723 5033954 ~ 5075079 (-) True gulp1b
XM_043242286.1 mRNA downstream 58723 5033954 ~ 5075079 (-) False gulp1b
XM_043241535.1 mRNA upstream 18343 5247314 ~ 5309056 (-) True tanc1a
XM_043241536.1 mRNA upstream 18343 5247314 ~ 5277041 (-) False tanc1a
XM_043242106.1 mRNA upstream 82653 5311624 ~ 5342802 (-) True pkp4
XM_043241001.1 mRNA upstream 115340 5344311 ~ 5349557 (-) False c6h7orf57
XM_043241000.1 mRNA upstream 115340 5344311 ~ 5349557 (-) False c6h7orf57
unassigned_transcript_1085 other downstream 178184 4955546 ~ 4955618 (-) True trnak-uuu_105
TU63298 other downstream 308365 4818191 ~ 4825437 (-) False LOC122347558
TU63299 other downstream 308365 4818191 ~ 4825437 (-) True LOC122347558
XR_006251220.1 other downstream 359256 4768805 ~ 4774546 (-) False gpr155b
XR_006251142.1 other downstream 718589 4394407 ~ 4415213 (-) False cdk15
TU63628 other upstream 485 5229456 ~ 5230710 (-) True G42958
XR_006251179.1 other upstream 393715 5622686 ~ 5639925 (-) False adam23a
XR_006251223.1 other upstream 462510 5691481 ~ 5699650 (-) True arl6ip6
TU63795 other upstream 502247 5731218 ~ 5736620 (-) False mylkb
TU64004 other upstream 1044352 6273323 ~ 6301137 (-) True G43180

Expression Profile