RNA id: TU64100



Basic Information


Item Value
RNA id TU64100
length 2039
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G43251
representative True

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 6815260 ~ 6823021 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTTTACATTGAATGGCAAAGTAGGGCCACCGCCACGGGGCTGTCTATTCATTAATTTCCAGCAGATTTCGGTCTAAATTACTGCTACGCGTTTCATACTGCTCGCTTTCAAAGTCTCGTGCGGCCATAAGAAACGTGATAGCCAGCGCGAGGAAAGGGATTCACTCACTCCGAGGATCCAAAGCAATTTCAAACGTTCAAGCCTTCAACTTTTTgaagtttaatgtttttatctgaaaatgaAAATAATAGCGGTGCAGAGGAGAGCTCCGCTCAGTTGAGTCAGAGGGAAGAAAATCTTAGGAAGGACCAAAACGGAGGGAGAGAGTCGGTCACTGATGGACGAACAATGCAGTATTTGAGACATTTTTCCAGTTATCGTGGAATCTTACGGAGAGGAGCTTCGACTCTCCCACCTTCCCTCCCTTCTCTAGGGAGAGGGGCCTCCTTCCACGTTGGACCCAGACTCAATCTGCTGCAGAGGGACAGAGTGGCCACGCTGTGAgcggagacacacacacacacacacacacacacacacacacagaaatctcACTGCTTCCGTTTTCAGCTTACACTGCTGCTGGAGCTGTTAGCCTGCCGGCTATTTTTCTTTGAGAGactataaaaatatgcaaatgctgTTGTTAAAGAGAACAGTCgagtttcttttctcttctgctcGCGCCCCTTGTGAGTCCGCAGAGCAAAAGGCGGAAGAATTTCACTTTTGTCCCTCACTTTGTTTatagaaagaaaggaagaattAAAGCAGACCAACAGTGACAGACACATCATAAACATTCGAAACGACCATGCAGATAGGGACggataaaataaatttttacaaatatacgCATACTGTATCTGCGAAGTGAGCGATTATTTTAAAACGCTTTCCTCCTCTTTACCTCTCATCATGGCGGACAGGTCTTAAACACAGAGCATCAACTGCTTTAAGAGCGCAGGAAAAGTACAGGGCGAATTTGTAAACCCCTCACGGTGCCGCGAACACTTTTTGAAGTGATTATGAAGACAGTTCAGATCAAAGGCTTTGACAACTCTGAGTGCCCGCCAAGACTGAGCCCCTGTAATCGCACAGAGCCCTCCGTACAACACAGCTCACACCCCTCAAGCACCCGGCAGAACGCAACGCCACACTCACGCATAAACAGATTATCAGGGGACAGAAAACGGCTGGAAAGTAAATATGGGATTAGAGTTTTCAGACTGAACTGCACCGATATAACCGAGGAGATTAGCGAAACATTTACAGGTAGATATTAATTATCGGCATCAGGGAGATGAGAGAAAaaacagtgaattaaaaaactccatgcatatgttttaaaaagctgCGTGCTATGTAACcctcattatatttaatattttcaactgTATTCAACATATCACATGTATTAAATTAACTGCTATAATTTTCTAAATCCTTTACAAAGAAACCATAAGAAGccggaaaaaaaaagagagggggGAAATGAGAGCGAGCAGAAAGTGCTTTGTTGAAGTCAACAAactcttatatttttatataattatgtgcTCTGCTGTGCGTAACTGCTAGGCAGCATTGTAACAAATGTCCATCATTGGCTCCATTAGCCCTGAAGACAGACGGCCATTACATTTAGCTCAGTATTTTGCTAACACTATAAGAAAACACAATAGCTCcgaacaaaacaacaacaatattaataGTGATTTTATTATCAAAGTTGTATCgtagaattaaaaatatatatttgtcatgcacatatgcacacacacacacacacacacacactttaagtCACATGTTAACAGGCTGACATCTTGAACCTTCTCACCATGTTGTTGTTTGGTCATTTAACTGAACATTTTGCTTTTGTCAGTGTATTTACTGTTTTGTGGTACCGCACTGGTGCTGATGTGAAACAATAAAACGTGTGTGACAGCAAGTCCCCTCTCTGCCTCCTGTTTACGGTGCCACTCAGCGCCTCTCTCAGACTAACCGCTTGGTACAGTCTTCTCTGGATCACTTCC

Function


GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU63996 lncRNA downstream 292995 6041876 ~ 6522265 (-) False cacnb4b
TU63963 lncRNA downstream 331867 5995956 ~ 6483393 (-) True G43161
TU63978 lncRNA downstream 791750 6018440 ~ 6023510 (-) True G43173
TU63979 lncRNA downstream 791750 6018440 ~ 6023510 (-) False G43173
TU63938 lncRNA downstream 853575 5958793 ~ 5961685 (-) True desmb
TU64182 lncRNA upstream 285155 7108176 ~ 7112750 (-) False agap1
TU64428 lncRNA upstream 498868 7321889 ~ 7322842 (-) False nomo
TU64427 lncRNA upstream 501749 7324770 ~ 7329008 (-) False nomo
TU64450 lncRNA upstream 606757 7429778 ~ 7430446 (-) True G43472
TU64459 lncRNA upstream 638170 7461191 ~ 7498435 (-) True G43478
XM_043242989.1 mRNA downstream 252470 6531856 ~ 6562790 (-) False inpp4ab
XM_043243000.1 mRNA upstream 31319 6854340 ~ 6867062 (-) True tgfbrap1
XM_043243018.1 mRNA upstream 44923 6867944 ~ 6873860 (-) True fhl2b
XM_043243011.1 mRNA upstream 133111 6956132 ~ 6971613 (-) False st6gal2b
XM_043243010.1 mRNA upstream 133111 6956132 ~ 6971612 (-) True st6gal2b
XM_043243009.1 mRNA upstream 133111 6956132 ~ 6971610 (-) False st6gal2b
TU64004 other downstream 514123 6273323 ~ 6301137 (-) True G43180
TU64005 other downstream 514123 6273323 ~ 6301137 (-) False G43180
TU63795 other downstream 1078640 5731218 ~ 5736620 (-) False mylkb
XR_006251223.1 other downstream 1115610 5691481 ~ 5699650 (-) True arl6ip6
XR_006251179.1 other downstream 1175335 5622686 ~ 5639925 (-) False adam23a
TU64095 other upstream 1219 6824240 ~ 6827728 (-) True G43248
TU64107 other upstream 178094 7001115 ~ 7027427 (-) False trim63a
TU64411 other upstream 464269 7287290 ~ 7287927 (-) False LOC122346787
TU64423 other upstream 756874 7579895 ~ 7586367 (-) True G43463
TU64424 other upstream 756874 7579895 ~ 7583120 (-) False G43463

Expression Profile


TU64100 Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
End of interactive chart.

TU64100 Expression in each Bioproject

Bar chart with 2 bars.
TU64100 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00065102 True 9287 lncRNA 0.43 2 NC_007117.7 14934250 ~ 14947955 (-)
grasscarp (Ctenopharyngodon idella) TU137395 True 4671 lncRNA 0.45 2 CI01000024 917374 ~ 927307 (+)
rainbow trout (Oncorhynchus mykiss) TU151493 True 758 lncRNA 0.37 2 NC_048566.1 30747628 ~ 30761914 (+)
rainbow trout (Oncorhynchus mykiss) TU1743578 True 933 lncRNA 0.49 3 NC_048582.1 17537512 ~ 17549323 (-)
mexican tetra (Astyanax mexicanus) TU151493 True 3030 lncRNA 0.40 3 NC_035909.1 19070606 ~ 19082785 (-)