RNA id: XM_043241644.1


Basic Information

Item Value
RNA id XM_043241644.1
length 9367
RNA type mRNA
GC content 0.51
exon number 93
gene id LOC122346787
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 7274840 ~ 7314774 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atGGCAGCGCTCGTAGTAGCGGAGATTTTGAGGGCTGAATCGCCACCGCTTCGGGTCAAAAATGGTGAAAGAAAGAGCCTGGATGACGGCGACCAGGAAAACTGCCGGGGATCCGTTTCCGATCAGACCTTCCTATGGAGACAGACCAGGTCACGCGTTTTGCGGCCGAAGTTAGGAAGCAGTACAGAAGCCTCCTGTGTGTCATTCGGCGGGTGCTGGTGGAGGAACAAGCTCCGCGGCCTCTCTCAGCCCTCACTGAAGCCATCCAGAGCATCTCGCTGGGAGCTGGTCCAGGCCGCTCCTCATGTTCTCCACTGCACTGCCATCCTTCTCTCGAATAACAAGCTGGGACACCAGGATAAACTTGGGGTGGCTGAAACTAAACTCCTTCATACTCTGCACTGGATGCTTCTGGCGACCCAGTGCCACCAGGAGCCTGGCCTGGGACGGTTCGGGGGCAGCAGTGGTAGCAGTAGTGCCTACCTTCAGCCCAACCAGGGGTCTCACAGACGCAATGGCAGCACAACCGAAGAAAATGAATATGCCATTCAAACTCTACCACAGGGCATTTAGCCTGTGCTGGAGCTCTTTGTGTTTCTCTTAGCGCCCCTCATTAACCGGATCAAAGAGTCGAACCTCACCTTTCAGCTGGCTGGTGGACTTGTTGTTGTAATAATGTTAGAACTTGCAAATCCTGATGTTCCTGCTTTTTCTTCCTTATCCAAACCCATGGcgtaacatttatttacagCTAAGAGGAACTCTCCAGTGAATAACCAGTGTAGTCTCCTTGATACCAGTAACCCATTGCCCTGCATGGTATGTGAATCAGCCCAGCCAGACTCCTCCTCCCCCTCGGTGACAGGGCAGAGCTGTCGCCAGTGGCAGCTCTGTGGAGAAGGAGGGTCCTGAGCCTTTGAGAAAGGATTTTCACAACCAAAAGAACTCACTGGGCGGAGAAGAGGGTGTGCACTGGGCCTCATATACTACCTGCAGCGACTCGTCAGATACTGCAGGGGGGAGAAGCCTGAGCGCCAGCCTGAGCCTCATACCCCCTTACCGCGGCGCGGCAGTTCCATGGTGGCGCTACCTTCTTTGTGTACTCACAAAACACAGGATATGACTTTGAAATGTAATGAGAAGCAGGTCTTTAGCTCTGAGACCTTCTCTAAAGTATCAGTTACCAACCAGAGACCAGCAGTCCCTGACCTCTCCACTGAGATGGGCATGAACATATTCAAAAgtttaaaaaccGAGAAGAAGATCGAGAGAAAAGGCTCTATCATTCACCATACTGGGAAACTACGGCGTCGAATGGGTGTACTAACACCCTGATGCCACGAGGATCACCTGGATGTCTCACCCACCGCATTGCAGCACCTTCTGGTTCGGGCTTCTCTGGACGGCTGGGAAACGACCGCGCACACTGTGGACCGAGGGGGTTGGCCTTCCCACTATCATGGATTAACCCGTCGTGGAAGCTCAGATACTGCCGGAGATGTGGACAGTCTTGGAGCAAAACATTTCCTCCACACAACTTTTCGTTTCTCAACAGTCACAGCGAACAAAACTACATCAAAGAGATTGGCCCTGTATGCCGTACTCACCCATGACATCAGTTCTCGGTTGCGACGTAGCTCTCCAACATCATCCAGATGCCTCCTTCAGCTGGGGGTGGTGCCCAGTGTGATAAAAAGCCTCCAAACCCACGAGGACAAGAGCGAGCGTCAAAGGAGAGCCAGTCAGGGCGAGGTGGAGCTCGGGGCGGCAGGAGAGCTGGGCGCGCCGAATGGAGGTGGTGGAGAGATGGAGAGGAGGGTTCCTGCCAGTCATTATGATGAAACCAAGCCCGTTCAGGTTAAAGCAGGTGAATACAGCAGTGCAGACAAGGCTGGCCGAGAACAACTTCACCCTGGAGGAGACAAGTCTCTGTGGCCCAGAGCATGGAGACTGTGGTGTGACGAGCAAATCCCAGGAGCGCTTTTAGGAAGGAAAGACTTTTTGGAGAAGATGTTCAAATCTCAGAGCGCTGCCAGTGATACAAGCAGCCAATCCGAGCAGGATACGTCCAGAGTGCACCACCGCCCACTCGGCACTACGAACCGTCGCTCGCGTCCAAGCTCCAGAAGGATTTCACTCTGTAAGAAACTCAAACTGCCCATAGGAAACTGGCTGAAACGCTCCTCTCTTTCTGGTCTGGCTGATGGGGTGGAGGACCTACTGGACATCAGCTCTGTGGACAGACTGTCCTTTATCAGACAGAGCGCTCCAAAGTCAAGATTCACCAGTGCAGTAAGCTGTCCGGAGATAGCGCTTCTCAGTATGgcgagaggaagaggaggagtcTTCAAGCGGCTCGGTAAATGGCGGTCTGGTCGGAAGAGGGCGCTTCAAGCACACCATTCTGTACCCCGACAAGGTTGCCATGGATTCAGGAGCGCTTGGCTTGCCAGTCAGGAAGCCATGAAGAATAAGAACATTGTTAATCTAGGTGCAATCAGACGGGGCATGAAGAGATTTCAGTTCCTGTTGAACTGCTGTACTAAGGAACCATGCGGTGCGATTTTAGCAGCAGCACTGGACCTGAAAGCACCCGTTGTGGCAAGGGCCTCGCTTTTCCTGGGTGTGCCTGGATTTTTGTGCATCGCTGTAACTTGCATGTTACTTCCAGCCCGGAAGTGGATGAAAGGACACCATGACATCACTAAAGAGGACTATCTAAGAGGGCGATCGCCTGTagtgaaacaaaaagaaacacagCTCCAGTGGAGCGCAGCAAAACACTTTTACCAGTGGGGGGAGATGCACTTTCGGCTGAGTGAAATTTGCCACTCAGACAGTGAGAGTCCAGCCGCTATCTTGGGTTTATCTCTGATGAAGAGCAAGAGAAGAGCAAAaaaggaggatgaggaagattATCTGGATGACGAGCCCCTTGTGGATTTAGAGAGCTGTCGTTTGCGTCTGGACCCTGAACTAGGCCGTCACCGCTATGAGAGGAAGATCAGCTTTGCAGGAATCCTGGATGATGAGGATGGACACGATTCTCTGAACAGCAGCAGTCACATCAAGTCTGACACTGGCTGTGAGGAAAAGAAATCATCACAAGAGCCACTGgCTCCAATTAGGAAGATACGCATTGGTGGTTCTCGGTTGCTGCAAATTAAAGGAGCAAGGAGTTTCCAGGTAAAGAAAGGAGGATCTTTGTCTTCTATCCGCAGAGCAGGAGTCTGAAAAGCACTAAGATGCAGACAGGACTCTGAGTCTGAGAATGACGCAGAATCGGAACGGCTGCTCTCCCAGAGTAGAGATACTGTCACTGATATAGGTCAGACACCCTTGGAGTGCTGAAGCGAACCAAGCATTGAACCTGAGGGTCCTGGCAGCACGGGGGGTGTGGAGGACAACTACCATCGCAACATGTCCTGGCTACATATCATGATTCTGCTGTGCAACCAGCAGAGTTTCATCTGCACTCATGTGGATTTCTGCCACCCTCGCTGCTATCAGCACCACAGTCGCTCTTGTGCTCGGCTCGTCCGCGCCATCAAACTTCTATACGGAGAGACAGTAGACAGTCTGAAAGAGAACAGCACTACCGGCAATATCAGTGGCCGTGCCAAGAAGAGCAAAGAGtgttcagACAAATCTTGCCTCCGGACTCCATCCATGAAGAGACGCCCCACTGACAGCAGtgctgagggaaaaaaagacaccGGAATGCTAAAGTACATCCGCAACCAGGTAATGAGTCTATCTCCAGCCCCTTTGTCCTTGCTTATAAAAGCAGCACCTATCCTGACTGAGGATATGTATGGAGATATTTTGCCTGCAGCATGGGAGCTCCTGCTGAGTGTGGATGAACATATGGCTGCAGCTGCAGctgCCCTGTTCCTGCTGTGCGCTGTGAAGGTGCCCGATGGAGTAACCGAAATGATGATGGCCGAGTTTCAGCATCAGGAAGCATGTCAGAGAATTAACTCCATTTTGAAATTCTACACTGTTTGGAGATTCCGGTACCAAGTGTGGCCTCGAATGGAAGAGGGGGCTCAACAGATTTTTAAGATTCCTCCACCTAGCATAAACTTCACGCTGCCCTCACCAATCCTAGGAATGCCCTGTGTGCCTATATTTGACCCTCCATGGGTTCCTGTTAATGCAGGCACTGTTCCGGATGCAATCAGTGAAGATCAGTCTAAATCGTTCTCAGCACGAGCAGTATCCCGTTCTCACCAAAGGGCAGAACACATCCTGAAGAACATgcagcaggaggaggagaagaggaggcTTGGTCGTGAGGCAAGCATCATCACGGCCATCCCTATCGCTCAGGAGGCCTGCTATGAGCCCACATGTAGCCCCCCGCCTGAGCAGGAAGAGGAAGTAGAAGATGTGGTGAACTTGACTTCACGTCGTCTGTCCGTCAGCCCTTCTTGCGCCTCCAGTAACTCCCACAGAAACTACTCCTTCCGCAGGGGGTCTGTGTGGTCAGTGCGCTCAGTGGTCAGTGCTGAAGATGATGAGAACACAACAGAACTCACACCAACACATCACATGCTGCAGCCACCCCAGTCTGTTTTTCCACCATGCATCTGTGCTGCTGTGTTGCCCATTGTGCACCTGATGGAAGATGGAGAAGTCCGGGAAGACGGAGTTGCAGTATGTGCTGTTGCACAGCAGGTTTTGTGGAATTGCCTGATCGAAGATCCAGCTTTAGTTCTTAGACATTTCTTGGAGAAACTGACAGTCAGTAATAGACAGGATGAGCTGATGTACATGCTGAGAAAACTGCTTCTTAACATTGGGGATTTGCCTGCACAGACCTCGCACATTCTTTTCAATTATCTGGTGGGCTTGATCATGTACTTTGTAAGGACTCCTTGTGAGTGGGGCATGGATGCCATATCAGCCACTTTGACCTTTCTGTGGGAGATTGTGGGTTATGTGGAGGGGCTTTTCAAAGATCTTAAACAGACTATGAAGAAAGAACAGTGTGAGGTCAAGCTTCTAGTTACTGCCTCCATGCCAGGAACCAAAACCCTGGTGGTTCATGGACAGAACGAGTGTGACATTCCCACCCAATTACCAGTGCATGAAGACACCCAGTTTGAAGCCCTATTGAAGGAGTGTTTAGAATTCTTCAATATTCCAGAGGCTCGATCTGCTAACTATTTTTTGATGGATAAGCGTTGGAACCTTATACACTATGCCAAGACCTATGTGCGAGACATCTACCCTTTCAGAAGATCAGTGTCTCCTCAACTCAACCTGGTTCATATGCTTCCAGAAAAGGGCCAGGAGCTCATTCAGAAACAGgTGTTTTCAAGAAAGTTGGAAGAGATTGGCCGAGTTCTGTTTATCATCTCACTTACCCAGCGTATGCCTGCTATGCACAAACAATCGCATGTCTCCATGCTTCAGGAAGATCTTCTGCCTCCGTCATTTCCTCGCTCTGCCATTGATGCTGAGTTCACGCTCTTCAACGAGCCTCTAGGTAAGACGATCCtttttaaaatggataataCTTTTGGTTTGGACACTTTACATAAGGTCCTATGGATCAAACTCCTGAGGAGATGTTTCTGGGCATGCCCAGCTTAATACCCTTGGGGTGATGAGATTATGCTATTTCTGAATGTGTTTAACGGTGCCCTGCTCCTACACCCCGAGGATAGCGCCCTCCTCAGGCAATACAGCGCCACAGCCATCAACACAGCTGTACACTTCAACCACCTCTTCTCCCTCAGTGGCTATCAATGGATCCTTCCTACTATGCTCCAGACATACGCAGATTATGAGAGCAACCCACTGTTGCGTCGAGGGATTGAATTTTGCTGCAGGCAGTTCTATATCCTCCACCGCAAACCTTTCATATTGCAGCTCTTCGCTAGTGTGGCCCCACTGCTGGAGTTCACTACTCGCACTAGTACTGGTTTATCAAAAGGAGTGTCTTCACAGTGTCTTTTCGACCTGCTGGTATCTTTGGAGGGAGAGACTGCAGATTCCTTGGATGCTCTGGAGCTGGTGAAGGCCGAGAAACCTCTCCGtttttcagatttttgctATGGTAATGAGGACCTGGCGTTCTCAATCAGCGAAGCTATAAAGCTCTGTGTCACAGTGGTTGCTTATGCCCCAGAATCCTACTGCAGTTTGCAAATGCTGATGGTTCTTGAGGCTTTAGTTCCGTGTTACCTGCAGAAGATGAAGGGTAACACACAGACTCTGGAGTCTGCGTCTGCGGCGAGGGATGAGATCGCTGCTATAGCTGCTCTGGCCACTTCTTTGCAGGCTCTGCTCTACAGCGTTGAGGCATTGACACGACCTATGACTGCACCTCAGATGAGTCGATGTGATCAAGGCCACAAGGGAGCAACTACAGCCAACCACACCATGTCTGGAGGACCAAACACCAGGGATAACCTACACCTTCTGGAGGAGGGTCAGGGTATACAGGAGGAACTGGATGAGCGTAATGCCCGTGAAGAGTTCCCGCCTCGCGAGTCTCTGCTTAACATCTGCACAGAGTTCTACAAGCACTGTGGTCCTCGTCTCAAAATCCTACAAAACGTGGCAGGAGAACCCAGAGTCACCGCTCTAGAGCTGCTGGATATCAAGTCTCATATGAGATTGGCAGAAATCGCCCACTCCCTTCTCAAATTGGCCCCGTACGACACGCAGACCATGGAAAGCAGAGGACTGCGCCGTTACATCACGGAAATGTTACCCATCACCGATTGGTCAGCAGAGGCCATTCGTCCCGCCCTCATCCTCATTCTGAAGAGGCTGGACCGCATGTTTAACAAGATTCATAAGATGCCCACACTCAGGTGCGTTCACCCTCAGGTTCTGTGCACCAGGCGGCAGGTAGAGTGGGAGGCAGCTAGCAGTCTGATCGAAGGGATATGTTTGACACTTAATCGGCAGCCAATCATTTCCTCTCCTCACCTGAGATCTCTAATCAACGTTTGTGTCAACCTGGTGATGGGGGTTGTGGGGCCGTCTAGTGTGGCAGATGGACTTCCCTTGTTGCATTTGAGCCCATACCTGTCTCCTCCTCTTCCCTTCAGTACAGCAGTTGTGCGTTTGGTTGCCATGCAGATCCAGGCATTAAAGGATGACTTCCCACTCAGTCACGTGATCTCCCCCTTCACCAATCAGGAGAGACGAGAGGGGATGCTGCTTAACCTCTTGATTCCATTTGTATTGACTGTGGGCTCAGGGAGTAAAGatAGTCCTCATCTGGAGCAACCAGAGGTATTTCTACTTCTGCAGACAGTCATTAACATCCTGCTACCTCCACGCATTATCAGCACTTCCCGTAGTAAGAACTTTGTTCTGGATGCATCCCCTGCCCACTGCTCCACCCCGGGGGACACTGGGAAAGACCTGCGTAGAGAGGGACTGGCTGAATCCACCAGCCAAGCAGCTTATCTTGCTCTGAAGGTGGTCTTAGTCTGCTTTGAGCGACAGTTGGGTAATCAGTGGTACAAGTTGAGTCTGCAGGTCAAAGAAATGGCCCTGCGTAAAGTTGGCGGTCTGGCTTTCTGGGATTTTATTGACTTCATAGTGCGCACAAGAATTCCAATCTTCATTCTGTTGCGCCCTTTCATACAATGCAAGCTTTTGACCCAACCAGCTGAGTCTCAGGAGGAGATCACGGCCCGTCACCATATTGCAGAGCAACTAGAGCGTCGTTTCATCCCACGGTCCCTCTGTAAAAGCTCTCTGTTTGCTGAGTTCAGCAACGAGCTCAAGATTCTGAAAGAGGCGGTGCACAGCGGCTCCGCTTACCAAGGAAAGACTTCCATCAGTACTGTTGGCACGTCCACCTCTGCATACAGGTTGAGTCTAGCCACCATGTCCCGCTCCAACACCGGTACAGGAACTGTCTGGGAGCAGGAGAGCCAACCCTCACGCCAGCCTTCCCAAGACACACTCAGCCGTAccgatgaggaggaggaggaaaATGACTCCATCAGCATCCCTAGCGTGGTAAGTGAGCACGAAGCTTTCCTCCCCAGGCTCATTTCCCAGCGGCGTTTCTCCAGTCACGCCACGGCGGCTGCCACTCAGCCCGAACCAGGCATGAGCACCATGCTGCCCAGTCACAGTGAACCCAATGTGCTAGATGAATCCCAGGGGCTTCTGGAGGAGGGTAACCTGTCTAGGGTTGCCAGCGTGCAGAGTGAACCAGGACAGCAGAATCTTCTCATCCAGCCACCTCTCGGTCGTAAGAGAGGACTTAGGCAGCTACGACGACCCCTGCTGTCTATACAGAGGGTGCAGGACGAGTCTCGTGGACGGCAGGGAGCCAGACTCTCTACAACCCGCAGGAGCATTCAGCCTAAGAGTAAACCACTCGATAGGGCTCACGGTGACCAAAAGAGGTCTGTTACTTTCACCGAGACCCAACAGGAAGCGGCTGGCAGATCTCCCACTGCCACTCCCAGCCACAGCGGTGGCTTACCAGGGGTCACAGAGGTCGGGAGGCTGAGCCATGCTCCATCAGAGTCCTCATCACCTAGCATCAAAACGGCCCAGCACAAACCAGCTTGGCCACAGGTCTGATTTTACCCAGTGTCAGTCTATGAGAATAAAGACAGGAAAGATCAGGGGAGTGTAAGGAGCAGTCTTTCTCCAACCCCCTCTGCTGCCTCAAGCTCCACTTCTAGAGCCTGCTCCCCTCTTCCTCCTCCCCTCCCCATCCTGAGCACACCGTCCCGACTGACCCCGACCCAGATCAGAGAAAGTCCCGAGGACGAAGAGACCACTGGGCTTCTGCAGAACACGGACACCTCCCCTAGCGTAGGAGAGGAGCGCGGCACGGAGAACCCACTCCTGACCTCGCTGCTCTCACCccgctctctctcctctccccTCCCCGTAGACCTGGATCTGGACGAGTCTCATGTGTGAGAACGTCCAGCTTCAGGAGGCCGCGCTAGTTTAACAGGACGTGGAAAAAGAATCCTGGGATCGGATTTCTCGAATGGCTtaaacttgaatttttttttcccgttgGTTTTTGGAAGCTCGGCTCGAGTTAAAGCATATTAAGCTATCACGGGACATCCTTTGCAATTAATAGACATGTTTATGAAGCACTGTGCGTAATCCTACACACCAATAAAGCCAATCAACGTTAATGTACCCTTCAGTCTTTAATGATATAAATGACGTGATTTGAAATCAAATATTAGCATTGTGTGAAAATtctaaaaaacaataaaaacattatatagatgtattctaaatatttgtcatctattaaagtatttatttagagGATTATATGAAAATGGATATTtagaataaatactataaatgctttattttcagaaatacaaAGACGCTTGTATCATAT

Function

GO: NA

KEGG:

id description
K24015 UNC80; protein unc-80

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64182 lncRNA downstream 162090 7108176 ~ 7112750 (-) False agap1
TU64097 lncRNA downstream 447112 6804058 ~ 6827728 (-) False G43248
TU64100 lncRNA downstream 451819 6815260 ~ 6823021 (-) True G43251
TU63996 lncRNA downstream 752575 6041876 ~ 6522265 (-) False cacnb4b
TU63979 lncRNA downstream 1251330 6018440 ~ 6023510 (-) False G43173
TU64428 lncRNA upstream 7115 7321889 ~ 7322842 (-) False nomo
TU64427 lncRNA upstream 9996 7324770 ~ 7329008 (-) False nomo
TU64450 lncRNA upstream 115004 7429778 ~ 7430446 (-) True G43472
TU64459 lncRNA upstream 146417 7461191 ~ 7498435 (-) True G43478
TU64487 lncRNA upstream 422316 7737090 ~ 7770424 (-) False LOC122346476
XM_043242920.1 mRNA downstream 2363 7269271 ~ 7272477 (-) True psmb3
XM_043241865.1 mRNA downstream 14069 7254864 ~ 7260771 (-) True slc19a2
XM_043241866.1 mRNA downstream 14199 7254864 ~ 7260641 (-) False slc19a2
XM_043241867.1 mRNA downstream 26724 7246256 ~ 7248116 (-) True faimb
XM_043241590.1 mRNA downstream 29661 7108162 ~ 7245179 (-) False agap1
XM_043241290.1 mRNA upstream 2173 7316947 ~ 7329565 (-) True nomo
XM_043242505.1 mRNA upstream 18249 7333023 ~ 7337888 (-) True LOC122347322
XM_043241848.1 mRNA upstream 41574 7356348 ~ 7382805 (-) False col18a1b
XM_043241847.1 mRNA upstream 41574 7356348 ~ 7382805 (-) False col18a1b
XM_043241846.1 mRNA upstream 41574 7356348 ~ 7376737 (-) False col18a1b
TU64107 other downstream 247413 7001115 ~ 7027427 (-) False trim63a
TU64096 other downstream 447112 6819359 ~ 6827728 (-) False G43248
TU64095 other downstream 447112 6824240 ~ 6827728 (-) True G43248
TU64004 other downstream 973703 6273323 ~ 6301137 (-) True G43180
TU64423 other upstream 265121 7579895 ~ 7586367 (-) True G43463
TU64424 other upstream 265121 7579895 ~ 7583120 (-) False G43463
TU64425 other upstream 265121 7579895 ~ 7586367 (-) False G43463
TU64510 other upstream 732328 8047102 ~ 8048008 (-) True G43514
TU64907 other upstream 1393932 8708706 ~ 8711960 (-) True G43801

Expression Profile