RNA id: XM_043241290.1


Basic Information

Item Value
RNA id XM_043241290.1
length 3631
RNA type mRNA
GC content 0.49
exon number 54
gene id nomo
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 7316947 ~ 7329565 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACGCTTCACCAGCGCTGCACGATGGGTGGAATTAAGGAGCTAACGATTCTTATTTTATCTTTCCTGTACGTGACATTTGTGAATGGTACTGATGATATTTTGGTAGGCTGCGGGGGCTTTGTTAAGTCAGATGTGGAAATTAACTACTCTGTCATTGAGATCAAACTTTACACTAAACAGGGCTCTCTGAAATATCAGACTGACTGTGCACCAATCAATGGTTACTTCATGATCCCTCTCTATGACAAGGGTGATTTTGTTATAAAGATAGAACCACCATCAGGATGGAGCTTTTAGCCAACAACTGTGGACCTGCATGTGGATGGAATTACAGACATCTGCACTAAAGAACAAGATATCAACTTTGTTTTTACCGGTTCGGTCCTCGGAACTatattaagtaaaggGCATTTGTTGGGACCTGCAGGGGTTGAAGTAAGTTTGAGAAAAGCAGGAGAAGCTGATGTCCTTCAAAGTGTCCTCACACAAGCTGGAGGCCAGTATACTTTCCTCAAGGTGCTTCCGGGAAGTTATGACATCACCGCCACTCACGCCTCATGGACCCTTGAGCAGAGCTCAACTGCTGTGGTTGTGTCAAGAAAAACGCCCCCCGCAGCTCCTCTTGTGGTAAAGGGTTACGATGTCTCTGGAGAGGTGCAGAGTGACAGTGAACCCATGAAAGGAGTCGGCTTCCTCCTTTACTCTGCCAGCGTAACACAGGAGgatATCAGTGGCTGCAGTGTGGCCCCTGTGGATGGAGCTGTAGTCATAGTGACCGcgcttgtgtttttgtgcagttcCCAGTCTCGTGAGGATGGTACTTTCTTTCCCTGCCTTCCCAGTGGCGAATATACAGTGGTCCCATATTACAGAGGGGAGAGAATCACATTCGATGTTGCTCCTTCTCGCATGGATTTCAAAGTAGAACACAGCAGTTTAACGTTGGAGCCAATATTTCGTGTCATGGGATTCTCTGTGATGGGCAGAGTTCTGAATAGCCCCAATGGAGAAGGTGTCGCAGATGCTGTAGTAACACTTAACAACCAAATTACAGTGGAAACTAAAGACGATGGTTCTCTCAGATTGGAAAATATGACCACAGGCACTTATACTATTAACACGCACAAGGAGCTGATGTTTGAGCCAGTCACTGTGAAGATTGCTCCCAGCACCCCTCAGCTGCCAGACATCATCACTGCAGGGTGAGTATCGCAGTGTGGTCACATCTCAGTCACCTGCCTTCCTGAAACCGTTAAACAGCTTGGGCACTACAGAGTTAGTCTCGATCAGAGACAGGATCAGGGCTTTTTCCGTACTGTTGAAAGTGACAGCCACGGAGTGTTCTGCTCTGTTAAACCAGGAGACTACAGCGTGCTCAGTGATTTGCACATTCatttagatgttttgttttatacaggTGACCCTCCTGAAAGTGATGTGAAGGCTGGACTTGCTCTTCAGCCGCACTTCTCGATATCTCACTTGTGGATCGTCCCTATTACTGACCTTGTCTTCACTCAGTTCATAGCATCTGTTTCTGGCTCTGTGTCCTGTCTTGTGGCATGTGGAGATCTGACAGTCACCCTTCAGCCTGTGAGCAGACAAGGAGACAGGCAAAACCTCCAGTTGTCTGGCAGCAGTGAAACTCTCAGCTTCACTTTCAATAACGTGTTACCCGGAAAGTACAAAGTGTCTATCACCCAAGAGGAGTGGTGCTGGAAGCAGAAGTCAGTAGAGATCGATGTACTTGACTCAAATGCGGAGGGAGTGGAGTTCAGACAAACTGGATACTTGCTTCGCTGCTCACTGTCCCATGCTATAACCCTGGATTTTTCTGAAGATGGCAGCTCACCAGAGAACGTTGGCATTTACAATCTGTCCAAAGGAGTCAATCGCTTTCTGCttttaatcgAAGGTGTTTATAAAGTGACTCCACGCTCCTGTCACCAATTCGAACAAGATTACTACACCTACAACACGTCTGCCCCAAGCATCTTAACCCTAACTGCTGTGAGACACCACATGACAGGACTTATCACCACTGATAAGATGCTGGATGTCACTGTCACCATCAAATCTTCCATTGAGAGTGAGCCTGCTTTGGTTCTGGGGCCCCTGCGCTCAAATGAGGAGCAGCTGGAGCAGCAGCTTCTGGAAATAGCTTCCCGTAAGAAGGAGAGGGAAGAAAGAGGAGAAGAACAGCCCCCTGTGGAAGAGAAACCGGATGAACTCCATGAGCCTTTCCACTATGAATTCTCATACTGGGCACGGTATGGGGAGAAGATCACAGTCACACCTTCATCCAAAGAATTTCTGTTTTACCCTCCTGAAGTAGAGGCTACAATCACTGGAGAACTGCCCGGTCAGATGGTGGAGATCGCAGGCGCAGCAGGACTGTTCCTCACGGGGAGTGTGTCACCTACACTGGAGGGTGTGGAAATCTCCATTAAGGAGAAAGGAGCCGCAAACCCTCTCATTACAGTCCTCACCGATGAAGCCGGAACCTACAGGTCAGTGTGGACCCTACATAGTGACTCTCTGTATGACATCAGTGCCAGTAAAGAGGGCTTTGTCCTGACTGCAGTGGAGGGAAGCACAGGAGACTTCAAGGTTGCCCTCGCAGGAGTCACTTTTGAGGTCAGCAGCAGATGGATGTGTCCTCTCTCTGGGGTTCTGCTGTCTCTCAGGGGCCACTTCCGCTCAAACATGCTCACTCAAGACACTGGCCTTCTCACCTTCAACAACCTGAGTCCTGGCCAGTACTATTTCAAGCCCATGATGAAGGAGTTCCGCTGGAGCTCAGCACAAATGATTACAGTAGAAGAAGGACAGGTCCTCCATATTCCCATCGCTGGCTTCAAAACAGCTTATAGCTGCTATGGAACAGTGCAGTTAGGAGGCGATGCGAGCAGGGGTCGCCAGGAGGCAGTGGGCAAAGAGTGTGGCATGTACAGTGAGGACACGGTCACTGATGAAGAGGGACGCTTTAGACTCAGAGGCTTTCTGCCAGCCTGTAACTACAACATTCAGCTGAGAGGAGAAGGAAACGATCACATCGAGAGAGCTTACCGCCACCAAACCATTGACGTGGGAAACACCGATATTGAAGGAGTAAACATAATCGCCTTCAGACAGATCAACCAGTTTGACCTGAGTGGAAATGTCATCACTTCTCCTGAGCCTCCGACTCTCTGGGTGAAGCTCTACAAGAGTGACAACCTCACAATCCCTTCCAGAGCGTGTCTCTTGGCCAGTCCCTTGTTCTTCCACTTTTCCTGCCACGTGATGGAGAGCTATGTCTTGATGCTACACACGCCACTCTCTCGCTCCCAGTATGACTTCAAACTCCCACAAGCTGTCACGCCTTCTGCTTACCACAAACATGTAACACTAACCTTTAACCCCAAGAGGAAAATACCAGATCAGGATGTTGCCCAGGATCTTTCTATCGCCTCTACCGCCACATTACTTCTATTGCTTGCCGCCTATAATCACGAGCGGGTGATCCCACTGCTTCTGCAGCTGGTCAGCCAGACAGGAGTTCGAGGACTTGCTCAGGCCGGCGGGGAAGGAATCTCAGTGGACAGAAGCCAAACGCCACAAAAAAGGCCAAAAACAAGACGTACATGA

Function

GO:

id name namespace
GO:1900176 negative regulation of nodal signaling pathway involved in determination of lateral mesoderm left/right asymmetry biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64182 lncRNA downstream 204197 7108176 ~ 7112750 (-) False agap1
TU64097 lncRNA downstream 489219 6804058 ~ 6827728 (-) False G43248
TU64100 lncRNA downstream 493926 6815260 ~ 6823021 (-) True G43251
TU63996 lncRNA downstream 794682 6041876 ~ 6522265 (-) False cacnb4b
TU63979 lncRNA downstream 1293437 6018440 ~ 6023510 (-) False G43173
TU64450 lncRNA upstream 100213 7429778 ~ 7430446 (-) True G43472
TU64459 lncRNA upstream 131626 7461191 ~ 7498435 (-) True G43478
TU64487 lncRNA upstream 407525 7737090 ~ 7770424 (-) False LOC122346476
TU64486 lncRNA upstream 435972 7765537 ~ 7770424 (-) True LOC122346476
TU64489 lncRNA upstream 438460 7768025 ~ 7770424 (-) False LOC122346476
XM_043241644.1 mRNA downstream 2173 7274840 ~ 7314774 (-) True LOC122346787
XM_043242920.1 mRNA downstream 44470 7269271 ~ 7272477 (-) True psmb3
XM_043241865.1 mRNA downstream 56176 7254864 ~ 7260771 (-) True slc19a2
XM_043241866.1 mRNA downstream 56306 7254864 ~ 7260641 (-) False slc19a2
XM_043241867.1 mRNA downstream 68831 7246256 ~ 7248116 (-) True faimb
XM_043242505.1 mRNA upstream 3458 7333023 ~ 7337888 (-) True LOC122347322
XM_043241848.1 mRNA upstream 26783 7356348 ~ 7382805 (-) False col18a1b
XM_043241847.1 mRNA upstream 26783 7356348 ~ 7382805 (-) False col18a1b
XM_043241846.1 mRNA upstream 26783 7356348 ~ 7376737 (-) False col18a1b
XM_043241845.1 mRNA upstream 26783 7356348 ~ 7376737 (-) False col18a1b
TU64411 other downstream 29020 7287290 ~ 7287927 (-) False LOC122346787
TU64107 other downstream 289520 7001115 ~ 7027427 (-) False trim63a
TU64096 other downstream 489219 6819359 ~ 6827728 (-) False G43248
TU64095 other downstream 489219 6824240 ~ 6827728 (-) True G43248
TU64004 other downstream 1015810 6273323 ~ 6301137 (-) True G43180
TU64423 other upstream 250330 7579895 ~ 7586367 (-) True G43463
TU64424 other upstream 250330 7579895 ~ 7583120 (-) False G43463
TU64425 other upstream 250330 7579895 ~ 7586367 (-) False G43463
TU64510 other upstream 717537 8047102 ~ 8048008 (-) True G43514
TU64907 other upstream 1379141 8708706 ~ 8711960 (-) True G43801

Expression Profile