RNA id: TU64450


Basic Information

Item Value
RNA id TU64450
length 435
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G43472
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 7429778 ~ 7430446 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATGCGTGGAGCTGACTTTGCAATGTTAGACATTTAGCTGAGGATACATGCGAGTTCAGAACATTTACAgatCAAAATGTGCGGTCTATTAAGgtagtcatttttaatcattggCCTGTTGGAAGTTGGACAGAGGTGAATGCTTACACACAGAGAATGTCAGCTCGTAGCTGTTTAACGCACATCTCAGCACCCAGTAGTTAACACCACACATGCCTTAGGATTTACTGGCTCATGCAGTCGCTTGTTTGTCGCCGTTCTTTGGAATACTTCGAAGCCTTCCAGCTGTGAAGTTTGAGGATCGACATCATTAAATAGTTCAGCTTTACACCGTCGTTATTGCTGTAACATGGTTGAAATGATTCCATGCAACGAAAGGACAGAGAGGACGTTAAGGAGGACACGAGGACTGATGGCAATGGACACACTGTGGAA

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64427 lncRNA downstream 100770 7324770 ~ 7329008 (-) False nomo
TU64428 lncRNA downstream 106936 7321889 ~ 7322842 (-) False nomo
TU64182 lncRNA downstream 317028 7108176 ~ 7112750 (-) False agap1
TU64097 lncRNA downstream 602050 6804058 ~ 6827728 (-) False G43248
TU64100 lncRNA downstream 606757 6815260 ~ 6823021 (-) True G43251
TU64459 lncRNA upstream 30745 7461191 ~ 7498435 (-) True G43478
TU64487 lncRNA upstream 306644 7737090 ~ 7770424 (-) False LOC122346476
TU64486 lncRNA upstream 335091 7765537 ~ 7770424 (-) True LOC122346476
TU64489 lncRNA upstream 337579 7768025 ~ 7770424 (-) False LOC122346476
TU64512 lncRNA upstream 367678 7798124 ~ 7799697 (-) True G43516
XM_043241072.1 mRNA downstream 41479 7385719 ~ 7388299 (-) True LOC122346455
XM_043241848.1 mRNA downstream 46973 7356348 ~ 7382805 (-) False col18a1b
XM_043241847.1 mRNA downstream 46973 7356348 ~ 7382805 (-) False col18a1b
XM_043241846.1 mRNA downstream 53041 7356348 ~ 7376737 (-) False col18a1b
XM_043241845.1 mRNA downstream 53041 7356348 ~ 7376737 (-) False col18a1b
XM_043241646.1 mRNA upstream 178027 7608473 ~ 7659200 (-) True tns1a
XM_043242123.1 mRNA upstream 231018 7661464 ~ 7694866 (-) False LOC122347094
XM_043242122.1 mRNA upstream 231039 7661485 ~ 7695119 (-) True LOC122347094
XM_043242121.1 mRNA upstream 231077 7661523 ~ 7695119 (-) False LOC122347094
XM_043241647.1 mRNA upstream 294957 7725403 ~ 7732324 (-) True LOC122346795
TU64411 other downstream 141851 7287290 ~ 7287927 (-) False LOC122346787
TU64107 other downstream 402351 7001115 ~ 7027427 (-) False trim63a
TU64096 other downstream 602050 6819359 ~ 6827728 (-) False G43248
TU64095 other downstream 602050 6824240 ~ 6827728 (-) True G43248
TU64005 other downstream 1128641 6273323 ~ 6301137 (-) False G43180
TU64423 other upstream 149449 7579895 ~ 7586367 (-) True G43463
TU64424 other upstream 149449 7579895 ~ 7583120 (-) False G43463
TU64425 other upstream 149449 7579895 ~ 7586367 (-) False G43463
TU64510 other upstream 616656 8047102 ~ 8048008 (-) True G43514
TU64907 other upstream 1278260 8708706 ~ 8711960 (-) True G43801

Expression Profile