RNA id: TU65020



Basic Information


Item Value
RNA id TU65020
length 548
RNA type TUCP
GC content 0.67
exon number 2
gene id G43890
representative True

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 9260616 ~ 9261245 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gcgcagctgtccgggtgcggtcctcgagagagcatcgccgcttatgtcgagtgggtgctggtgtcgtgcaattcGTCGATGACTGTTGTGCTGGAGGACaccgacaccagccccactcaggatccagagcccagctcagcccttcaccgcatggtcgagccccagcctgagcccactgctgacacgggggcggagtcgagcgcgaccacggacccatcgccagagagagcgacagagctgTGGAGcataacaggacccgagccgagtacgtcagaccaggtgagCGAGCTGGCAACAGAGCTCACCACGGTGGAGCCAGCCGACTGCAAGGAGAgtgcggagtggagctccgcccactgcacatcggctgagggtgagctgattccccacctggggctgctggatccccaAAAACTCCCTCCATTGTctgcgccacgtgcgctccctcccgtgcccgcgccacgtgcgctccctccagtgcccgcgccatgtgcgctccctccagtgcccacgccttgtgcgctccctccagtgcccgcgcctcgtgc

Function


GO: NA

KEGG:

id description
ko04710 Circadian rhythm

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU65014 lncRNA downstream 4607 9255726 ~ 9256009 (-) True G43884
TU65008 lncRNA downstream 7548 9251986 ~ 9253068 (-) True G43880
TU65011 lncRNA downstream 8937 9250699 ~ 9251679 (-) True G43881
TU64979 lncRNA downstream 235187 9025208 ~ 9025429 (-) True G43856
TU64978 lncRNA downstream 237735 9022519 ~ 9022881 (-) True G43855
TU65022 lncRNA upstream 1158 9262403 ~ 9262609 (-) True G43892
TU65024 lncRNA upstream 3082 9264327 ~ 9264574 (-) True G43894
TU65036 lncRNA upstream 14395 9275640 ~ 9276072 (-) True G43906
TU65048 lncRNA upstream 19686 9280931 ~ 9281402 (-) True G43915
TU65049 lncRNA upstream 20270 9281515 ~ 9282468 (-) True G43916
XM_043241779.1 mRNA downstream 264983 8971674 ~ 8995633 (-) True srp68
XM_043241665.1 mRNA downstream 293236 8955256 ~ 8967380 (-) True evpla
XM_043241777.1 mRNA downstream 309443 8933083 ~ 8951173 (-) True acox1
XM_043241776.1 mRNA downstream 309443 8933083 ~ 8951173 (-) False acox1
XM_043241778.1 mRNA downstream 310192 8933083 ~ 8950424 (-) False acox1
XM_043242589.1 mRNA upstream 22158 9283403 ~ 9299043 (-) False nol11
XM_043242588.1 mRNA upstream 22158 9283403 ~ 9299043 (-) True nol11
XM_043241579.1 mRNA upstream 47341 9308586 ~ 9352668 (-) False si:dkey-237i9.1
XM_043241581.1 mRNA upstream 47341 9308586 ~ 9352668 (-) True si:dkey-237i9.1
XM_043241580.1 mRNA upstream 47341 9308586 ~ 9352665 (-) False si:dkey-237i9.1
TU64905 other downstream 546758 8712021 ~ 8713858 (-) False G43801
TU64907 other downstream 548656 8708706 ~ 8711960 (-) True G43801
TU64510 other downstream 1212608 8047102 ~ 8048008 (-) True G43514
TU64423 other downstream 1674249 7579895 ~ 7586367 (-) True G43463
TU65026 other upstream 4757 9266002 ~ 9267324 (-) True G43896
TU65029 other upstream 7943 9269188 ~ 9270922 (-) True G43899
TU65030 other upstream 10173 9271418 ~ 9272305 (-) True G43900
TU65247 other upstream 764333 10025578 ~ 10027635 (-) False c6h17orf67
TU65385 other upstream 880366 10141611 ~ 10145147 (-) False cd7al

Expression Profile


TU65020 Expression in all Baseline Samples

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TU65020 Expression in each Bioproject

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TU65020 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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