RNA id: TU65048


Basic Information

Item Value
RNA id TU65048
length 472
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G43915
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 9280931 ~ 9281402 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGTATTGGAACAAGAGCTGCAGAATTTTAAACCAACTAAAGCTGAGATGGACAAATGTTTATACATCTAAGTCTATATGTGCATTAACTAGTGTGTGAACAACTAGAACTGCCATATTATTGGTTGAGAAAAGGGGATGAAAAGTGTTAATATTACGCAAATGGAAGTAAGCAGTCCATGTGATATTAATTTGAGTTTTAAAGGATAGTGTGCTATCCGTGATGACACCCAAACTTTTAACCTGTGAGGAGTAAATGTTATTGCTTTTAATGTACAAGTAAAAGCAATAACATTTAGACAAAACAGATCTAGTGCAAAAAAAGCAGAGCCTCCGTTTTGAGAgctggagaaaaagaaacagtgTCTTTGGCAGACAGGTGAAGTTGGGTGTCCTCTGCATAAATGTACATGAACACCGTGTTTCCTCAAAATGTAACCAAGAGgtagtaaataaataagagaatTGGCTCC

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65036 lncRNA downstream 4859 9275640 ~ 9276072 (-) True G43906
TU65024 lncRNA downstream 16357 9264327 ~ 9264574 (-) True G43894
TU65022 lncRNA downstream 18322 9262403 ~ 9262609 (-) True G43892
TU65014 lncRNA downstream 24922 9255726 ~ 9256009 (-) True G43884
TU65008 lncRNA downstream 27863 9251986 ~ 9253068 (-) True G43880
TU65049 lncRNA upstream 113 9281515 ~ 9282468 (-) True G43916
TU65157 lncRNA upstream 103707 9385109 ~ 9729660 (-) True G43991
TU65182 lncRNA upstream 298294 9579696 ~ 9915583 (-) True G44010
TU65205 lncRNA upstream 610829 9892231 ~ 9898950 (-) True G44031
TU65186 lncRNA upstream 641823 9923225 ~ 9926256 (-) True G44014
XM_043241779.1 mRNA downstream 285298 8971674 ~ 8995633 (-) True srp68
XM_043241665.1 mRNA downstream 313551 8955256 ~ 8967380 (-) True evpla
XM_043241777.1 mRNA downstream 329758 8933083 ~ 8951173 (-) True acox1
XM_043242589.1 mRNA upstream 2001 9283403 ~ 9299043 (-) False nol11
XM_043242588.1 mRNA upstream 2001 9283403 ~ 9299043 (-) True nol11
XM_043241579.1 mRNA upstream 27184 9308586 ~ 9352668 (-) False si:dkey-237i9.1
XM_043241581.1 mRNA upstream 27184 9308586 ~ 9352668 (-) True si:dkey-237i9.1
XM_043241580.1 mRNA upstream 27184 9308586 ~ 9352665 (-) False si:dkey-237i9.1
TU65030 other downstream 8626 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 10009 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 13607 9266002 ~ 9267324 (-) True G43896
TU65020 other downstream 19686 9260616 ~ 9261245 (-) True G43890
TU64905 other downstream 567073 8712021 ~ 8713858 (-) False G43801
TU65247 other upstream 744176 10025578 ~ 10027635 (-) False c6h17orf67
TU65385 other upstream 860209 10141611 ~ 10145147 (-) False cd7al
TU65678 other upstream 1428643 10710045 ~ 10716741 (-) True G44358
XR_006251151.1 other upstream 1773633 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 1773633 11055035 ~ 11069457 (-) False brdt

Expression Profile