RNA id: TU65157


Basic Information

Item Value
RNA id TU65157
length 1832
lncRNA type sense_over
GC content 0.38
exon number 2
gene id G43991
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 9385109 ~ 9729660 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tattcacatttgaATTTGTTGCTGTGTTCATTGCTCATGCTTTAACGTCATTTAAACTGCTTGATTTCGTTACAAAAATAGCCAACCACAGGAGGAATATGGTTTTTCTAAGGCtaaggaaatacattttttaagagtTGATATTAATCCGTTTGAGTACTCGCTGGACGAGCACCTCTAAATTCAGGGTTATTATTGACTCTGCAGCATCAGATATAGCTTTATTTAAACAGATGTGGTCAGAAacacaggcagggtcaaacaatGGTAAATGAGCATGTCACAGGCAAGACACTAAACTACTCCTAAAGCAAGTATGGGTCTGCAGTCAGCTAACAATATCCAGAGGGTTTGACAAGAGGGTTAATTCAATAATGCAAGCAATAATCCAGGCAGGTGCAAGCAGTGTCCAAAACAGCAAGACAAGATGTAATCTTAAACAGATAATAAATTCAGGGAAGGCAGCTGACAGATAAGATGAGATAAACCAGACAATGAGTGAGACACGAATGAACCAGACTGTAAACTAAAAGGAACCAGACTTAAATTTTAACTGAGAACACATAAGGGCTCCATAATGTTGGTATGTCTAGGAGGGTGATGAACACAACAGGAACTAAGTGTGTGTTAAATACTGTGTTATTGCTTTCATGTTAGTGATTATAACTGTGTGCACTTAGTGCAATAAATGATGGGCAATGCAGTCCAGGGTAATGTGTAACAGTCTGTGTAGTGTGAGAGTCCATGTGGTGGATAATGACCTTCCACATCCTGAGCCTTCAAAAAACAGCAGCATCATCATGCCTTTGTTTTGAGATGAGGCTTACCCTCTGAGCAACAACCTCCTAGCCTGAACAACACATTTAACTTACAGATTATCACATGAAAGACAAATTGTCCCCTAAAGTGTCAGCCATTGATCTTCTGCTTGCCAATCATTAATCATGTAGCTGATGTTTGAAGCAAAATGAGTATGCTTGGTGGGTGGGTGGTTGTTGGTTTGGGTACTGAGGATGATGGAGGAAAGTATGATGAATGATGAGAACAGTGGGAAGCTTGAGTGACTTTGCACAGGAAGCGGTGACAGTTAATCAGAGACATTTTAGATCTCTTCATTTGCAATATTAGAGTCAGGTTTTTGATCTCCTCTACTATCAACACTCTCCTCCTTTCTcctctttgtttaaaatattgtctGCAGCCTTACTGTATAGCTATTATTTGTAGTTCAGTGTTGTGGCCATTTGTCTTAGATCTGTACCTCACACAATGCAATGGTTGTGCTGTGCAAAGTCATGGAGTGACAAGAGTTATAGAGGCAGAAGCATCTGGGAGAGGCAAATCATTTTTGCAAACTGTGTCTAAAAAAAGGGGAATTGCTGGGAACTCTTACgagaacaattaaaataataaaaataataataataaaaaaactttctatAAGTTTTAGTTTCTCCTTTTATCTCTTCCTGCCTCCCATATGTCCTCCTCATCTTTCTTCTCTActaattatttttctcttttttcccccttttcttACTTCCAAACTATTTTCACTTGGTCTGGAATATTCACTTTTGCCTGTGTTAATTAACTTACTAAAAATggcaacattaaaatattctgaCTACACTGTATCcaaaactatccctttaagtcagTGGTTCACAAAATGTGATATGAGTACCATTATTGGTACTCAGGCTCCCTCTGATGGTACTTGGAGATATTTTCTGATGTGgtatttggaataaaaaaaggttgagaaccactgctttaaGTGATACAGGTAATGTAAGCTAAATTTTAACATCAACAAAATGGATGAGctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65049 lncRNA downstream 102641 9281515 ~ 9282468 (-) True G43916
TU65048 lncRNA downstream 103707 9280931 ~ 9281402 (-) True G43915
TU65036 lncRNA downstream 109037 9275640 ~ 9276072 (-) True G43906
TU65024 lncRNA downstream 120535 9264327 ~ 9264574 (-) True G43894
TU65022 lncRNA downstream 122500 9262403 ~ 9262609 (-) True G43892
TU65205 lncRNA upstream 162571 9892231 ~ 9898950 (-) True G44031
TU65186 lncRNA upstream 193565 9923225 ~ 9926256 (-) True G44014
TU65187 lncRNA upstream 197571 9927231 ~ 9928405 (-) True G44015
TU65213 lncRNA upstream 201126 9930786 ~ 9932524 (-) False G44036
TU65216 lncRNA upstream 204041 9933701 ~ 9935477 (-) True G44038
XM_043241579.1 mRNA downstream 32441 9308586 ~ 9352668 (-) False si:dkey-237i9.1
XM_043241581.1 mRNA downstream 32441 9308586 ~ 9352668 (-) True si:dkey-237i9.1
XM_043241580.1 mRNA downstream 32444 9308586 ~ 9352665 (-) False si:dkey-237i9.1
XM_043242589.1 mRNA downstream 86066 9283403 ~ 9299043 (-) False nol11
XM_043242588.1 mRNA downstream 86066 9283403 ~ 9299043 (-) True nol11
XM_043241799.1 mRNA upstream 48590 9778250 ~ 9781983 (-) True LOC122346913
XM_043242274.1 mRNA upstream 218142 9947802 ~ 9948988 (-) False anapc11
XM_043242275.1 mRNA upstream 218142 9947802 ~ 9948978 (-) False anapc11
XM_043242276.1 mRNA upstream 218383 9948043 ~ 9948978 (-) False anapc11
XM_043242033.1 mRNA upstream 295793 10025453 ~ 10027680 (-) True c6h17orf67
TU65030 other downstream 112804 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 114187 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 117785 9266002 ~ 9267324 (-) True G43896
TU65020 other downstream 123864 9260616 ~ 9261245 (-) True G43890
TU64905 other downstream 671251 8712021 ~ 8713858 (-) False G43801
TU65247 other upstream 295918 10025578 ~ 10027635 (-) False c6h17orf67
TU65385 other upstream 411951 10141611 ~ 10145147 (-) False cd7al
TU65678 other upstream 980385 10710045 ~ 10716741 (-) True G44358
XR_006251151.1 other upstream 1325375 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 1325375 11055035 ~ 11069457 (-) False brdt

Expression Profile