RNA id: TU65187


Basic Information

Item Value
RNA id TU65187
length 1175
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G44015
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 9927231 ~ 9928405 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGggttgattaaaatatatttggtcTTTATATAGGctattataatatgtataatttgtaatgcataattaatgattatataatttctttattttatgtgcatgtACATTGATTTTGCTGTAAACGTTTAAAGTAAATTGCTTCGTTTGAGTGAGGCGTTTTGCCCCATAGGTGGGTAAAGTGCCCCCTTGGTTTAAATTGAATTTCTGTTAAACAGTCAAATAACATGAAAACTCTCGACGTTTTTCATACTTGCTTTATAATGTCAGTGTCACTGTGATTCAACTTTTCTGAACACATTTAGGCCTAACCTCTCTTTAACATAAATGACCAGCCAATAGAGTGAGAAGGAGTTTTTCCCCACTAGATGGCACAACTGAACTAAGTGCAGATAAGTGTTcgtataaaatataacattcgTATAAAGACTTTGTTCCTTATTGTGGCTTATTTCTGAAGCATGGTTTAGTATTGTTTTACATATTGCCTGTGTCACGCTACTTCTGTAAGAAGGGTTTGAACTAGGCTAGGCCACGTGTGAGATCACAATCAACCAAAACACAATTGAACCTAGTTATTTAATGCTTCACATGcctgtaaaaattatatatacccTTTCACACAGTTTGTCCTGTGTTACATACAGCCATAAACCTGTAGGGAAGAACCTGGGCCTAAGTCTTTTTTGCTCTAAGCTATGCAGCACATTGATGACGCAATCCTTAATGGAGCTGCTGAGTATCATGTGTTTCCCGCAGTACGTCTGAAAAGAGTTTTTCAGCGCTGTAAATAAATTACTGAATTACTTATCTATATTGGTGTATCTGCTGTCTTTTGAATGCAGTTATTTGTAATATAGTTGCATAATTTGAGATTATACTGCTAAGTAAAAATTAATTGGTCCACACacttaaactgattttttttttaaccctttcaATGAAGGGCtgaaaaaaagttgttgttgaTTAGTCCTGACTTCCTGTTTTACTGCACTGGGCTATAAATATGTGATGAAACACAGGCTAATTTGTATAGTTTCTCCTCACTGGGAAAGACCTGAGAAGAATGTGGAGAAAATAAGCCGTTTTTAGctcataaatcaataaaattgaATGGGAATGGCATTAAGATAATTTTTTGATGGTTGAAACCCATttgcactaaaacaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65186 lncRNA downstream 975 9923225 ~ 9926256 (-) True G44014
TU65182 lncRNA downstream 11648 9579696 ~ 9915583 (-) True G44010
TU65205 lncRNA downstream 28281 9892231 ~ 9898950 (-) True G44031
TU65157 lncRNA downstream 197571 9385109 ~ 9729660 (-) True G43991
TU65049 lncRNA downstream 644763 9281515 ~ 9282468 (-) True G43916
TU65213 lncRNA upstream 2381 9930786 ~ 9932524 (-) False G44036
TU65216 lncRNA upstream 5296 9933701 ~ 9935477 (-) True G44038
TU65210 lncRNA upstream 11019 9939424 ~ 9940614 (-) True G44036
TU65215 lncRNA upstream 13165 9941570 ~ 9942006 (-) True G44037
TU65219 lncRNA upstream 14210 9942615 ~ 9943218 (-) True G44040
XM_043241799.1 mRNA downstream 145248 9778250 ~ 9781983 (-) True LOC122346913
XM_043241673.1 mRNA downstream 216633 9586425 ~ 9710598 (-) True LOC122346819
XM_043241579.1 mRNA downstream 574563 9308586 ~ 9352668 (-) False si:dkey-237i9.1
XM_043242274.1 mRNA upstream 19397 9947802 ~ 9948988 (-) False anapc11
XM_043242275.1 mRNA upstream 19397 9947802 ~ 9948978 (-) False anapc11
XM_043242276.1 mRNA upstream 19638 9948043 ~ 9948978 (-) False anapc11
XM_043242033.1 mRNA upstream 97048 10025453 ~ 10027680 (-) True c6h17orf67
XM_043242429.1 mRNA upstream 111022 10039427 ~ 10048868 (-) False trim25
TU65030 other downstream 654926 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 656309 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 659907 9266002 ~ 9267324 (-) True G43896
TU65020 other downstream 665986 9260616 ~ 9261245 (-) True G43890
TU64905 other downstream 1213373 8712021 ~ 8713858 (-) False G43801
TU65247 other upstream 97173 10025578 ~ 10027635 (-) False c6h17orf67
TU65385 other upstream 213206 10141611 ~ 10145147 (-) False cd7al
TU65678 other upstream 781640 10710045 ~ 10716741 (-) True G44358
XR_006251151.1 other upstream 1126630 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 1126630 11055035 ~ 11069457 (-) False brdt

Expression Profile