RNA id: TU65216


Basic Information

Item Value
RNA id TU65216
length 240
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G44038
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 9933701 ~ 9935477 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCTGTAAACTCAATGACCAGTGGAAGTTGGTTGGATTTGATAAAGGTCAGAAGCTTTTCTTTGCTGATCTCTCCTTCAAATGCATTGCGACCCTCATCAActtcttaaaaagaacaaCACCATCCTTGGCCACTTCAAACTTTGAAAAGACTGCATCATCTGAGGTCATGCCAAAGGGGATGTCATCCACAGCCTCTGCAGTTTTAACAAAGGCCTTAGCATCTTCTGATTCAACATC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko00040 Pentose and glucuronate interconversions
ko00053 Ascorbate and aldarate metabolism
ko00140 Steroid hormone biosynthesis
ko00591 Linoleic acid metabolism
ko00830 Retinol metabolism
ko00860 Porphyrin and chlorophyll metabolism
ko00980 Metabolism of xenobiotics by cytochrome P450
ko00982 Drug metabolism - cytochrome P450
ko00983 Drug metabolism - other enzymes
ko05204 Chemical carcinogenesis - DNA adducts

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65213 lncRNA downstream 1177 9930786 ~ 9932524 (-) False G44036
TU65187 lncRNA downstream 5296 9927231 ~ 9928405 (-) True G44015
TU65186 lncRNA downstream 7445 9923225 ~ 9926256 (-) True G44014
TU65182 lncRNA downstream 18118 9579696 ~ 9915583 (-) True G44010
TU65205 lncRNA downstream 34751 9892231 ~ 9898950 (-) True G44031
TU65210 lncRNA upstream 3947 9939424 ~ 9940614 (-) True G44036
TU65215 lncRNA upstream 6093 9941570 ~ 9942006 (-) True G44037
TU65219 lncRNA upstream 7138 9942615 ~ 9943218 (-) True G44040
TU65220 lncRNA upstream 7138 9942615 ~ 9943200 (-) False G44040
TU65221 lncRNA upstream 10190 9945667 ~ 9948985 (-) True anapc11
XM_043241799.1 mRNA downstream 151718 9778250 ~ 9781983 (-) True LOC122346913
XM_043241673.1 mRNA downstream 223103 9586425 ~ 9710598 (-) True LOC122346819
XM_043241579.1 mRNA downstream 581033 9308586 ~ 9352668 (-) False si:dkey-237i9.1
XM_043242274.1 mRNA upstream 12325 9947802 ~ 9948988 (-) False anapc11
XM_043242275.1 mRNA upstream 12325 9947802 ~ 9948978 (-) False anapc11
XM_043242276.1 mRNA upstream 12566 9948043 ~ 9948978 (-) False anapc11
XM_043242033.1 mRNA upstream 89976 10025453 ~ 10027680 (-) True c6h17orf67
XM_043242429.1 mRNA upstream 103950 10039427 ~ 10048868 (-) False trim25
TU65030 other downstream 661396 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 662779 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 666377 9266002 ~ 9267324 (-) True G43896
TU65020 other downstream 672456 9260616 ~ 9261245 (-) True G43890
TU64905 other downstream 1219843 8712021 ~ 8713858 (-) False G43801
TU65247 other upstream 90101 10025578 ~ 10027635 (-) False c6h17orf67
TU65385 other upstream 206134 10141611 ~ 10145147 (-) False cd7al
TU65678 other upstream 774568 10710045 ~ 10716741 (-) True G44358
XR_006251151.1 other upstream 1119558 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 1119558 11055035 ~ 11069457 (-) False brdt

Expression Profile