RNA id: TU65221


Basic Information

Item Value
RNA id TU65221
length 2819
lncRNA type sense_over
GC content 0.34
exon number 4
gene id anapc11
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 9945667 ~ 9948988 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGAAAACAGTACGTACGTAGGACATTTCTGAGCCTAATAGGTCTGTTAGAACGAATATAAAActtatagcttttattttagtatttttttcctgacaAACTCTTGTTCCACACTCCAGTCTAGCAGGTGGCGGTAATACACGTTACACATACGCTTTAGTTTGCCAACGGCCAAAATCGttcaagaagaagaagaagaagaagaagaagaagaagagctcaCAGGCATAAAGGAATGGATATTAGAGCGATAACACAGTGAGCTTGATTAATAATTACACTTCTGTGGTTTCCAGAAGAGATGAAGGTTAAAATCAAGCAGTGGAATGGCGTGGCGTCCTGGTTGTGGGTGGCCAACGATGAGAACTGCGGCATCTGCAGAGCGCCTTTCAACGGCTGCTGCCCAGACTGTAAGGTCCCCGGAGATGACTGCCCGTTGGTGTGGGGTCAGTGCTCTCACTGTTTCCACATGCACTGTATCCTGAAGTGGCTGAACTCTCAGCAAGTGCAGCAGCAGTGCCCCATGTGCCGCCAGGAGTGGAAATTTAAAGAgggAGACACTTCCTGAGGAGATTCAATAAGTGCAAACTCAGATTGAttcttttgcttgtttattGTACAGTGGTATATTTTACATCCTACAAATGTAgaattttgtaattaaacatcccacaaaatgaaaatgtttttaaaaacacgttTTGTACAAAGAAGCTGGCATCACTGATAAAATAACTGTGTTttgcagtcattttaaattatgaacaCCATACAGAATGTCACAGGATACAATGGTATGCATTTGTGCATATCTTAACATGAAATTCCCACaatttgaagtattttaaaattgaatcagCACTCTTTTTGtccattaattcattattttggCATAATAAATAGTCAACCATTCTTAGCTAACTTGGgagttaatttttaaaatgtaacatgcaTGTTTGTCCACAATTATTGAGAATGAATTCATTTGCCCTGATTGTCTGTAAGCCATATGGTCATTCTTGATTAAATTCctggtatttaaaaataattagcaatGAAGGCACCACAGTGGAATgtattactaaattattaaaaataattataaactaCAAACcacatgataaaaatgtattatgtggTTTATGCAATGGTTGAAAAGAGATGGATTGGTTACCAGTTACCAGTACAAGTGGTAAAGGTGTTGAGAAACTAATGCAGCAGAAGCATGATATTGAACATTTAGAGAAACTGAAATAGAGcctatatataatgaaatatgacaCTCAAAACAGTGACATTGGCACACCCTCGCCCAGGATTTCCAAGTGAAAGCATTAACATACAAGAGTTCAATGTATTATTGAATTATCACTGTGTAAATCTTTGTGCTATATCTTTCTTGCAGACATCTGTAAACCAAATATgatatttagtgattttttaatatttgtgaaaCAAGGAAAATTTGTGGACAGTGAATTTCAAAGCGTTTTACAGGAACcaggcaaaataataaaaagtagaaTTCAAATAGagagaaatattatttctactaaaaaaaaaagtttatgtgcatgtgtctatatttttttaaatataagaaccaatgttttcagaaacaatacatttgtttttgggAGGAAAGGTGGtacatgaaattaatattttatataccaGAGAATGTACCAGAAGTTACAGGACAGTCGAACCTTACTTAAATTGCCTTATAaccaccatttaaaaataaatataactaccAAATTGAGTAATTAAGGTCTTTCATTGTTTGCAAATCATAAATATGTCAAATTCAAATTGTTAGCCCAGATaaactaaaaaattaaattattaacatacaagcataaatttaaatatacagttcCATAAATGCTACCCTTAATTACAGAAAGCTAGATATCATTGGCCCTTCcttgaatttatttacattcagaaACAAGTCTAGACAAGGTTCAGTGGGTTACCTGTCAACAAATCTTACTCCagtcttttctgttttcttgcaACATGGAATAACCgtactgaaaaatatataaaaaatgtttttagttaagtgattttgttggtttgacttaaaaatcatatttaaaaaaaaacatgctttttgacATGAATGCTAGTTTACATTAGCATAAATAGAGTGCTGTAGGGATGGCATATTTTAGGCCAAATCCCACTCCCGTGATCCCGAATGGGGTTTTGGCTAATGCCTGAAATAAAGGTAACACAGGAACAAGCTTTTTTTctacaacataaaatacatcagttacacccccatgttttttttttttatctatttgtcTTGAGAAAAGTAATGATCCAACAAAACAGCTAATAGATAGATGATTGATAGATGATTTTGGGGTAATTAAACATCACAAAGTAACAGAAAATCTACATCTATGCTGCGctaatttttgaaaattatcATTATAAGCGAAACCTATAATAATATCCTTTTATTGTTCACATAGCTTGTTTTCTGCGAtaattcaaaaactaaataaataaatccagacTTTTGTCACCTACAAGAACACATCATCACTGCAGCACTCTATATGAAAATCAACGGaaaattctaaaaacatttttaaagcagcacTTTGTCCCCAGCAGGACAAAGTTATCAGTGAACaacactgatatttaaaaagaaaaaaaaaggggaatCAGCAAATAAAGGCCCAAATGTCATCAGTGCACCAGGCATGAGATCTATGATGTAAATCCAACTGTTTCATAAAGACTTTTTGGagtcttgtgtgttttttcttttcacatcgTTCAAGTCGACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65219 lncRNA downstream 2449 9942615 ~ 9943218 (-) True G44040
TU65220 lncRNA downstream 2467 9942615 ~ 9943200 (-) False G44040
TU65215 lncRNA downstream 3661 9941570 ~ 9942006 (-) True G44037
TU65210 lncRNA downstream 5053 9939424 ~ 9940614 (-) True G44036
TU65216 lncRNA downstream 10190 9933701 ~ 9935477 (-) True G44038
TU65251 lncRNA upstream 64951 10013936 ~ 10018068 (-) True G44065
TU65294 lncRNA upstream 135005 10083990 ~ 10084275 (-) True G44095
TU65311 lncRNA upstream 148995 10097980 ~ 10098179 (-) True G44105
TU65386 lncRNA upstream 189920 10138905 ~ 10145147 (-) True cd7al
TU65412 lncRNA upstream 289434 10238419 ~ 10238618 (-) True G44167
XM_043241799.1 mRNA downstream 163684 9778250 ~ 9781983 (-) True LOC122346913
XM_043241673.1 mRNA downstream 235069 9586425 ~ 9710598 (-) True LOC122346819
XM_043241579.1 mRNA downstream 592999 9308586 ~ 9352668 (-) False si:dkey-237i9.1
XM_043242033.1 mRNA upstream 76468 10025453 ~ 10027680 (-) True c6h17orf67
XM_043242429.1 mRNA upstream 90442 10039427 ~ 10048868 (-) False trim25
XM_043242426.1 mRNA upstream 90442 10039427 ~ 10048861 (-) True trim25
XM_043242427.1 mRNA upstream 90442 10039427 ~ 10048857 (-) False trim25
XM_043242428.1 mRNA upstream 90442 10039427 ~ 10048856 (-) False trim25
TU65030 other downstream 673362 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 674745 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 678343 9266002 ~ 9267324 (-) True G43896
TU65020 other downstream 684422 9260616 ~ 9261245 (-) True G43890
TU64905 other downstream 1231809 8712021 ~ 8713858 (-) False G43801
TU65247 other upstream 76593 10025578 ~ 10027635 (-) False c6h17orf67
TU65385 other upstream 192626 10141611 ~ 10145147 (-) False cd7al
TU65678 other upstream 761060 10710045 ~ 10716741 (-) True G44358
XR_006251151.1 other upstream 1106050 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 1106050 11055035 ~ 11069457 (-) False brdt

Expression Profile