RNA id: XM_043242274.1


Basic Information

Item Value
RNA id XM_043242274.1
length 687
RNA type mRNA
GC content 0.44
exon number 4
gene id anapc11
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 9945667 ~ 9948988 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGCGAAGAAAACAGTACGTACGTAGGACATTTCTGAGCCTAATAGGTCTGTTAGAACGAATATAAAActtatagcttttattttagtatttttttcctgacaAACTCTTGTTCCACACTCCAGTCTAGCAGGTGGCGGTAATACACGTTACACATACGCTTTAGTTTGCCAACGGCCAAAATCGttcaagaagaagaagaagaagaagaagaagaagaagagctcaCAGGCATAAAGGAATGGATATTAGAGCGATAACACAGTGAGCTTGATTAATAATTACACTTCTGTGGTTTCCAGAAGAGATGAAGGTTAAAATCAAGCAGTGGAATGGCGTGGCGTCCTGGTTGTGGGTGGCCAACGATGAGAACTGCGGCATCTGCAGAGCGCCTTTCAACGGCTGCTGCCCAGACTGTAAGGTCCCCGGAGATGACTGCCCGTTGGTGTGGGGTCAGTGCTCTCACTGTTTCCACATGCACTGTATCCTGAAGTGGCTGAACTCTCAGCAAGTGCAGCAGCAGTGCCCCATGTGCCGCCAGGAGTGGAAATTTAAAGAgggAGACACTTCCTGAGGAGATTCAATAAGTGCAAACTCAGATTGAttcttttgcttgtttattGTACAGTGGTATATTTTACATCCTACAAATGTAgaattttgtaattaaacatcccacaaaatgaaaa

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0005680 anaphase-promoting complex cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65219 lncRNA downstream 4584 9942615 ~ 9943218 (-) True G44040
TU65220 lncRNA downstream 4602 9942615 ~ 9943200 (-) False G44040
TU65215 lncRNA downstream 5796 9941570 ~ 9942006 (-) True G44037
TU65210 lncRNA downstream 7188 9939424 ~ 9940614 (-) True G44036
TU65216 lncRNA downstream 12325 9933701 ~ 9935477 (-) True G44038
TU65251 lncRNA upstream 64948 10013936 ~ 10018068 (-) True G44065
TU65294 lncRNA upstream 135002 10083990 ~ 10084275 (-) True G44095
TU65311 lncRNA upstream 148992 10097980 ~ 10098179 (-) True G44105
TU65386 lncRNA upstream 189917 10138905 ~ 10145147 (-) True cd7al
TU65412 lncRNA upstream 289431 10238419 ~ 10238618 (-) True G44167
XM_043241799.1 mRNA downstream 165819 9778250 ~ 9781983 (-) True LOC122346913
XM_043241673.1 mRNA downstream 237204 9586425 ~ 9710598 (-) True LOC122346819
XM_043241579.1 mRNA downstream 595134 9308586 ~ 9352668 (-) False si:dkey-237i9.1
XM_043241581.1 mRNA downstream 595134 9308586 ~ 9352668 (-) True si:dkey-237i9.1
XM_043241580.1 mRNA downstream 595137 9308586 ~ 9352665 (-) False si:dkey-237i9.1
XM_043242033.1 mRNA upstream 76465 10025453 ~ 10027680 (-) True c6h17orf67
XM_043242429.1 mRNA upstream 90439 10039427 ~ 10048868 (-) False trim25
XM_043242426.1 mRNA upstream 90439 10039427 ~ 10048861 (-) True trim25
XM_043242427.1 mRNA upstream 90439 10039427 ~ 10048857 (-) False trim25
XM_043242428.1 mRNA upstream 90439 10039427 ~ 10048856 (-) False trim25
TU65030 other downstream 675497 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 676880 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 680478 9266002 ~ 9267324 (-) True G43896
TU65020 other downstream 686557 9260616 ~ 9261245 (-) True G43890
TU64905 other downstream 1233944 8712021 ~ 8713858 (-) False G43801
TU65247 other upstream 76590 10025578 ~ 10027635 (-) False c6h17orf67
TU65385 other upstream 192623 10141611 ~ 10145147 (-) False cd7al
TU65678 other upstream 761057 10710045 ~ 10716741 (-) True G44358
XR_006251151.1 other upstream 1106047 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 1106047 11055035 ~ 11069457 (-) False brdt

Expression Profile