RNA id: XM_043241161.1


Basic Information

Item Value
RNA id XM_043241161.1
length 3653
RNA type mRNA
GC content 0.43
exon number 14
gene id atad5b
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10116617 ~ 10123525 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGATGATGCAACTCACGAGCAAGCGATCTTCCGCCAGGCGCGAGATTAGACCGCCAGACTGCGACAGTTCTATCCGGTGAATTAAAAAGTGCTGTAAACCAAGGCACAAAACGCGTTCTTCGTTAATGTGGGGTTATGACTTCATTTCAACAGTCAGAAATGCCAACCGGAAACAATGATGTTTCGAGCACTGCTGGCTAgagtttttttaacttttagaaatggaaaataattatGTCAAAATGgagacacatttttttctacCTCAGCATACTAGAATGAAGAAATCCTCCGGAAATGTCTCCGACAGAAAGGCCTTTTGTGCGGAGAGCCTACTAGAGACCGACAGCAAACCCAAAACGCATGTGCATCCGAAACACAACAAACTAAAACGAGCGAAAACACTAAAAAGATCGGAGAATTTGAGCGGCTGTGGAAACAACCCCACCTATATAACTGAGACCACCGAGTCCAGGTCGTTTTGTGATGATATTCTGTATAACCGTAAAGGAAAGCTGTTTACAGGTGCTGCAATGACTACTAGCCGTAAAGACAATTCACCAGATCTTCCCACAGAGTGCGTAAGAAAGGAAGGCTTCAAAACCCCTGTGAATTCTCAAACGGTTCAAAACGTTTCTCAGGTGCAAAAGGATGGATATTTCAAAAGCAGTAAACTGACATTAAAGAGGATGAGTATGCAGTTCACCCCCGTtcctgcagagagagaaagtggcTCGAATAGCAAAAGtctaaaagacatttatgttaGAGCTGAGGTGTTGTCCAGCTGTGTACGAATAAACGCCAGTGGCAAGGACCTTTTAATGGATCAGCCGGTCACTGGACAAATCCCAGAGAGCACGAAACATGCTTGTGGTCAAGCCTTGGCTCTCATCGGTCATCCGGCTACTCGGAAAATCTGTAGTGAAGCAACCAATGACAAACCCCTCAGAGAAATGAAGTCTGGATGGAGAAATGAATTAGGCAATGAAAGGAGAAGCGAGTTGCTGGAAGAGATACAGATACTCAATTTGAAGTTTCCTGTCCACAGgttcttctctctcctcctgAGGAAGAGAACTTCACCTAAGGAGGATATTTCTGCTTTGGAAGCAGCTGAAACTGATGATTCAAAGCATCCTTCAGCTTCTgtccagagaaagagaaaacaagagtTGGAGGAGCAGGCGCGGACGTGCAAACGTCACAGGACAAGCAAAGGCTGCGTTTCTGGTGATAACTTGGATTTTGAACAATTCTCTGATGATTTGGCCCCCTCTCGTGCAAAGTACAGAAACAGACTGAGCCGAACAAAACACAGACGGCAGACTACGTTCTGTGCTGTAGTGAGTGAATCTGTTCATCAGGACCCATGGCTTGGTCATTTACGAAGAGAGGATGTTCTCTGGACAGATAAGTATCAGCCTCAGCGGTCTAGTGAAGTCATTGGCAACTCTGCATCAGTAGAGCAACTACACGGCTGGTTGAAAGAATGGAAAATAAGAGCAGACACTGAGGTACGGAGAAAACGACAAGAtgagaggaggatgaagattGAAAATAGTAATGAGTCATGGGACTGTGGTGATTTTGAAGGTGATCGTGTATCCGTAGACCATGAGCAGGAGCTGTGTAACACAGTGCTCATGATTGGTCCATCAGGAGTGGGTAAAACAGCTGCTGTGTATGCCTGCGCACAAGAGCTGGGATTCAAGGTGTTTGAGGTGAACAGCTCAGTCCAGCGCTGTGGGCGTCTCATTCTCTCCCAGCTCACGGAAGCAACTCAATCTCATCAGGTGGACATTCAGGAAATAAAAACTCTCAAATCTGAAATCATTAACCAAAGCAAAATCAAACCTGATCCACCTTgCAAGGAAGGTCATCATCTAAGGAAAACTTTAAGTTCTCCTAGCATTTCCCGTCTGAGCACTAAACCACAGCCAGTAAAACTCACTCGCTTTTTCAAGTTGAGTAGCAAAAAGTCTGCAGGTAAAACCTCTGATGATCCTGAACATTATATACACGATGGGCTTCAGAGATCCGTGTCTGGATTTAAGAACAATAGACGAGGTGGTCAAGATTCAACATGTCCTCCTAAAGGTCCTACTTCACTTGGACGGAGCCGAACAGTCCCCATGTCACTTATACTATTTGAGGAGGTTGATGTCATTTTCCCTGAAGATGTTGGATTTCTTGCAGCTATTAAGACTTTCATGAGCACAACCAAAAGACCAATAATTCTGACAACCAATGACCCTTCATTTAGTGGAAGACTTAAGGGGCATTTCGATGAAATTCATTTCCAAACTCCTTCACTGGAAACCACCAGAAGCTAtctgcagtgtttgtgtgtggtggAGAACATGAGGACTGATCCAGAGGATGTGGCTTTTTGGCTGTGTCAGAATAAGGGGGATATTAGACAGAGTATTCTCCAACTTCAGCTCTGGGTCTGTAGTGGTGGGGGGAGCACAGAACTACAAACTCTCAAGAGCATACTTAAATGTGGATCCTGGGCTGAGTTGGAAAACAGCAGGAATCTGGAGGTCCTGGCAGAGAAAATAGGAACAGGTCTACTATACTCTAACATTGAAAGTCTATTTTCTCCTCATTTCACTTCTAAATCTTCTTGTCAGCAACAGTCAATAAACCTTGATGAAAAGACGAAAGGAGAAAAGCCAATCGAAGGCTTAATGTTACAGAACTTCACAAATGCACATGAGGTTGGACCAGATAGACTCTCcacatgcaaaagaaaaaaatatttatcatctTGTGAGCCAAAAACCTTTTTGAACCCACATTCAACCTCACATCTCAAATGTTTCTCTTTGGATGCATCTTACAAGTCTTCAGTCCCTTCAAAGCAAACTAAATCTTTGGCTTCTGAAACAGATGTCCATGGACAAGATGAATCACTCTTGCTGGTTTTTGcaagtttttttgaaaatatgtctTTTCTGGATGCTTATTTACAAAGACCATCTTTCAGAGGAGCTGGATTTTGTAAGTCAGAACCTCTTGGTTGGTTGGGTGCCACGTTAAAGGACGGTTTATTAGACTTACCAAGAGAGGAGCAGATTggacaatgttttaaaaattcatCACAGATATTAGCCATTGTGGAAGGTTTGGCTTTCCATCAGTGTCGGACTGAACTCTCTAGGATCTTGATGGAAGCCGCGAGACTGAGGAAAGAATCGTCTTTAGAGAGATTAGAACAAATGGTTTGTGCTCCGTCTCTACCGTCTGACCAAAAACCCCTCAGAATGTGTCGATGCAAATTCTGTGAACCTAgTGGTGTGCAGAAGCGCAGTGAGGTTTTATCTAATCTGATCTCCAGCAACAAGTTCTGTCGTCGTTGTACTAAATATGTTCTTTCGATGGACTACCTGCCCACTATGCGCTCAATCTGCAGAGCTGAGAAAGTTACAGAACAGCGCTCATTGAGACATTCACACTACCTCTCGAGCCTTCACCTGCCCAGACGCTTGCTGGAATTCATGGCCTTGGATTTCCCTTGATTGTTTGACATACCGCTTAGGAAAATCCTACATGACTTCTAAACTGTTACTTGTTTGTTGATTTGTAGAGTCACAGAATATATTTGTGATAGATCATTTATtctaagcaaataaatatatttaaattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65312 lncRNA upstream 14803 10098347 ~ 10101815 (+) False LOC122346827
XR_006251178.1 lncRNA upstream 15213 10096930 ~ 10101405 (+) True LOC122346827
TU65288 lncRNA upstream 37181 10079002 ~ 10079437 (+) True G44089
TU65148 lncRNA upstream 62357 10048059 ~ 10054261 (+) True G43982
TU65134 lncRNA upstream 76254 9979865 ~ 10040364 (+) False dgke
TU65348 lncRNA downstream 46567 10170092 ~ 10175131 (+) True G44120
TU65359 lncRNA downstream 81107 10204632 ~ 10210377 (+) True G44129
TU65365 lncRNA downstream 104789 10228314 ~ 10228626 (+) True G44135
TU65367 lncRNA downstream 119255 10242780 ~ 10243410 (+) True G44137
TU65442 lncRNA downstream 235067 10358592 ~ 10358799 (+) True G44189
XM_043241682.1 mRNA upstream 337 10107180 ~ 10116281 (+) True suz12b
XM_043242119.1 mRNA upstream 43090 10056898 ~ 10073528 (+) False rab11fip4b
XM_043242117.1 mRNA upstream 43090 10056899 ~ 10073528 (+) True rab11fip4b
XM_043242120.1 mRNA upstream 43090 10056900 ~ 10073528 (+) False rab11fip4b
XM_043242434.1 mRNA upstream 77604 10028970 ~ 10039014 (+) False dgke
XM_043240989.1 mRNA downstream 3251 10126776 ~ 10130543 (+) True LOC122346392
XM_043240983.1 mRNA downstream 7121 10130646 ~ 10141607 (+) True rhot1b
XM_043240984.1 mRNA downstream 7121 10130646 ~ 10141607 (+) False rhot1b
XM_043240985.1 mRNA downstream 7121 10130646 ~ 10139879 (+) False rhot1b
XM_043242108.1 mRNA downstream 304066 10427591 ~ 10430538 (+) True mchr1a
XR_006251198.1 other upstream 190637 9916051 ~ 9925981 (+) False pecam1b
XR_006251197.1 other upstream 191720 9916051 ~ 9924898 (+) False pecam1b
XR_006251195.1 other upstream 193249 9916052 ~ 9923369 (+) False pecam1b
XR_006251196.1 other upstream 193461 9916052 ~ 9923157 (+) False pecam1b
TU65119 other upstream 305043 9786840 ~ 9811575 (+) True G43962
TU65546 other downstream 746884 10870409 ~ 10873578 (+) False LOC122347096
TU65822 other downstream 1291748 11415273 ~ 11420330 (+) True G44478
TU65824 other downstream 1291748 11415273 ~ 11420330 (+) False G44478
unassigned_transcript_1089 other downstream 1849446 11972971 ~ 11973044 (+) True trnai-aau_2
XR_006251144.1 other downstream 1878623 12002148 ~ 12010109 (+) False LOC122346564

Expression Profile