RNA id: XM_043242568.1


Basic Information

Item Value
RNA id XM_043242568.1
length 1523
RNA type mRNA
GC content 0.35
exon number 4
gene id LOC122347367
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10355877 ~ 10358850 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAAGGTAATTATAGTCACGAAGAGCTTTGAAGATGCCGTGTGTCGTGAGGTACAGTTCTCTACTGATCAgtatctgtttaaaaaacatcttGTGTGCAGAACAAAACTTACCAGcTGAATCTATGACAGTAGCTGTTGGAAATGAAGTCATTATCCAGTGTGCTACTGATAAAACCCCTCTAGATGGGGTCTACATGTACAAAAAAggatcaaatgaaaacaaacacctCGTCTTCTACTATTACAAAGACGgcacatttaacattaaagaAGCAAAGTATAAAGATAGATTCAGAGTGATCGGAATATTTCCCAAGCTTTTAGCTTACTTCTCAAATGTAACTACCTCAGACATTGGGGTGTACTGGTgtgaatttaattttgatgagaATATTACTTTGGGCAAAGTCACAGGGCTGTTCATAAAGATTATGGACAGCAGGGATAACAAATTGCAGACAAATATGAATGACACAAAAGCAGTAAATATAACAGAATCACAAAATAACTGCACGGAAAATATTCATGTGAAGATCGTTCTCGCTGTATGTGCTGTCCTGTCGCTACTGTGTGTCATTGGCTTCATCTTTGTGATTGTGAAGGTGAAGGGCCGTTgggggaataaaaaaaacaggcctTCAAATGAACCCCCAGACTCAGTTTATGAAGAGATGAAACGGAGCAATTTCGACATCCAGCCGAGTGTACGGATGCTCATCAACCATGGCTATCAAACCACCAAGCtattttgctaaatatcttTGATATTAGATTTTAAGTTGTATCATTTTCTATTTGGATTGGCAGCTGAATGATTAATTGCTTTGAATTTGAgtttatcatttgcattttttgagttcagagagagagaaatacaatTCTATAATTAATTTAGTGTGAATATCATGGTTATATTTTAAGCTGTAGGTCAAgaagaatttaaaatagtttcagtgtgaggaacaaacaaaatatgcagCAGAGATATTGTTAGCTGATGGACAGATGAAATGTCTAATACCTCATTTGTGGTCTGATGAGCTCATGCATGTGCAAAGAGCTCAAGGAGGAATAGCAGGTAATCAAATTTCACTCATCTAATCATAATTTCGGCAattaaagcctttttgtttcattgcaaactttaaactaaaaatagcaAATGGTATTTAACTCTCtgaggttttttgttttaaacttggTTCCATTCTTAACCAATCCTGTTCCTTTGCAGTTACGGGCATGTTCTCTTCTTTTCTGTAACTTTTCAGAATGCATCAAAACAAGCCACTGTTTTTGTGTTGACTAACAATGTCGAATGTCAAGTTTTAAAGCTTATGCAGATGAGgcttttatatatcatttaacaTGCATGCTGTTTTACTCACCACCCAGCTGcatatgtattacattttaatgtttttaatttaattctacaGTTTTTTCTTGTGTTTGAAAAAAGTGTCTCATGTCTCTGTACTGTGCCACATAATGTAAACACTgtataatgcaaaaacaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65408 lncRNA downstream 112476 10242704 ~ 10243401 (-) False tnrc6c2
TU65413 lncRNA downstream 113368 10242210 ~ 10242509 (-) True G44168
TU65412 lncRNA downstream 117259 10238419 ~ 10238618 (-) True G44167
TU65386 lncRNA downstream 210730 10138905 ~ 10145147 (-) True cd7al
TU65311 lncRNA downstream 257698 10097980 ~ 10098179 (-) True G44105
TU65479 lncRNA upstream 13790 10372640 ~ 10372852 (-) True G44208
TU65480 lncRNA upstream 14320 10373170 ~ 10373568 (-) True G44209
TU65481 lncRNA upstream 17290 10376140 ~ 10376578 (-) True G44210
TU65484 lncRNA upstream 29194 10388044 ~ 10388442 (-) True G44213
TU65642 lncRNA upstream 149838 10508688 ~ 10508796 (-) False usp43a
XM_043241894.1 mRNA downstream 20836 10296004 ~ 10335041 (-) True sept9b
XM_043241896.1 mRNA downstream 40408 10296004 ~ 10315469 (-) False sept9b
XM_043241897.1 mRNA downstream 48196 10296004 ~ 10307681 (-) False sept9b
XM_043241385.1 mRNA downstream 112452 10204617 ~ 10243425 (-) False tnrc6c2
XM_043241384.1 mRNA downstream 112452 10204617 ~ 10243425 (-) False tnrc6c2
XM_043242153.1 mRNA upstream 18481 10377331 ~ 10384083 (-) True zgc:174863
XM_043241196.1 mRNA upstream 31197 10390047 ~ 10394216 (-) True jpt1a
XM_043242047.1 mRNA upstream 36323 10395173 ~ 10398631 (-) True sumo2a
XM_043242050.1 mRNA upstream 40495 10399345 ~ 10406457 (-) False gga3a
XM_043242048.1 mRNA upstream 40495 10399345 ~ 10406457 (-) True gga3a
TU65385 other downstream 210730 10141611 ~ 10145147 (-) False cd7al
TU65247 other downstream 328242 10025578 ~ 10027635 (-) False c6h17orf67
TU65030 other downstream 1083572 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 1084955 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 1088553 9266002 ~ 9267324 (-) True G43896
TU65678 other upstream 351195 10710045 ~ 10716741 (-) True G44358
XR_006251151.1 other upstream 696185 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 696185 11055035 ~ 11069457 (-) False brdt
unassigned_transcript_1087 other upstream 1613630 11972480 ~ 11972551 (-) True trnag-ucc_1
unassigned_transcript_1088 other upstream 1613859 11972709 ~ 11972780 (-) True trnap-ugg_4

Expression Profile