RNA id: TU65503


Basic Information

Item Value
RNA id TU65503
length 2639
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G44225
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10434521 ~ 10444076 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttgcatataaaacatctccaaaaacaaacaataaaaaagagagCATTTCAGGGTAAGATTCCTTCATTCATTGTCTTGTCAGTACAAGTGTTCATTATTTCAAGCATAGTGAAAAGTAGGATCTTTTTGGAAGCAtgggagaaggaaaaaaaatgtaattgctgcTTTTTGCATAACCCCTTTGATATACTCAACAAAATAACAGGGATGATTAAATGATGATAGAAGAAGACAAAAACCTTTAGTGGGCTTCGTACAAAATTtcaacaaagcagaaaaaaagagaaaaacaattcCATGTATGTTTTTCAATTTATGCTGAAAACTGTGAATCCTATATGTCTGGTACACGCTCTACAGTACCGTAATGGACTAAATAAATGCCATATTAAAAAGTGTGCACTTGTTTTCTTATGACAGTCATGTCCTTTGTTCTGAACATAGGTAGAAAACGAAACAAGCCTTCATTTCATATCTCTGCTTATATTTAGATcaacaaaaactaatacaaaCTGTATAATAGAAACATCATATCTGaatgtttattacaattattaaaccTTATTCTACAGTGCAATTCAAACTTTACTGCATACGGTACTCGGGGTTCACTGGAAAAACGTGCCCGCGGCAATGTTTCggacaaattattttatgttgcatCTTGCAGTCAAGCCCGAAGAAGTACTGCTAATGTTTCATCCTCCTCCAAACTGCTTCACTACACGGGTCGTTGAATGAGACATTTGTGACATCTGACATACAATGCCACTCACATCAAATTGTTCAAATCATAATATAAGACATATTTGCCGTGTTAAGCACGAATGTGACTTGCACCAGATGAGTTACAGAGCAAGTTTACTGTATCAGCTGGAGCTGGTCACATGATGCAAACACAGTATTGTACAGTATTGGTCTTAAACGGTTCATAATATTGTGCAAGGAACAGCAAAAATAagactttattaataaataatctgcTCCTGTAGTCATGATTAGTTTAAAATACGTGTTTTACATCCACTAGTGTTCATCAAAGGTGAACTAGATacgagtttttaaaaaaaaaatggagataGAGGCACatttttccaatgagcctaATGTTGGAAGAAATTCCGATAGAttgcaaagaaataaacatggtattttacatttgatgagCTAATGAATATTCCCCATCATACGCAATGTGTGTTTGCTCTGCGTGGGATTTTGATTCAGTTTGATATATTAAGTCACAATCGCACGGAGagaaaaaagctatttaaatccttgataatgcaaatgtttttttatatttgcagaaGAATGAGCTTTGCTGTGCATATTTAGTAGTAATGAGCTGCATTCAGGCTATGTCAATGCTTCTAGAGAGGGATAGCGTGAGAGTTTGTCTTGTCTGATTCGTCAGATTAAAGGACAATATGGACCCAATTAGTCCAAATAGGAAGATGACAATATGATATTTTCTGACGGTTGTTTTTCAAACGATAACGTCTACTCTTTAAGGTCACTTTACTGGTTACAATGAGGCTTTTCTTTATTCTGCAGTCATTGGTATTGCTAGATCTCCACATTATTAGAGCACATCAAAAATCttcagatgagaaaaaaaatgacattgttgtttcaaaccttctttcttttttaacaccTCAGCAAAATATACACACTGCTCTTTctcatacaatgaaagtcaatggtgactgGGAGTGTCAAGctacaaatatatcaaaaagcACACTAACAATCCATATTAGagagtaaaagaaagaaaacaatacttaatattaaatatattattattaaatatgaacattattcttaatatcattattaactcatattttgtgtgtgtgaactttCTTCAGTCCAGTATTGAAACACTGGAAACACTATAAATGCACTTGTTAATTTTTCATGAATTATGATTAAACAGCAAAAAGACATGCACCTTGAACAGAAGGGGTGcgtttttataattatactaAACAATACTTCAGATGGATACTTGTACTTGCTAAACAACGCATTCTATCCAATCAGAACATCACTTTAGAGCTTGATAGTTGCTGGTTACCATTaactttctttaaatgaaaaagagcGGCATGAACACCCTGCTTAACATCTGTGTTAGTGGTTAAATATCGGAAAAAATCGAATGCTTgcaacaacatgagggtgagtaaacttACTGCATTCTAACTAGGTTTATGTGATGGATTACAGCACTGGTGATAAGGTGAGGTTGATTGTGCTTTTCAGAAGTGACGGTGTTTTAGAGGTGTTCGGTCTAACACGTTGTGTACATGTGTGACAGAGCAGCAGAAACGTATCCCACCCCTTTAGATTCTGTTAGATTTTATAAAAGAATTGTATAATACATATTcgtaaatgtattaatgcatactgcaaaacaagcaaaaattaATAAGCTTTATGTTTTGGTCTGAGAGCATGACTAAGTCAGACAGTGGTGCAAGAAATTCACTGAAAGTGCGAGAACTGACATCCTTGATAAATGTCACGAAAACCCATGAGAGGTTAGCAGCCAGTCAGTACAATCTACAGAATCATAAAAGATGAAActgaaaagttatatatatatatatatatatatatatatatag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65495 lncRNA upstream 6934 10426411 ~ 10427587 (+) True G44220
TU65489 lncRNA upstream 20541 10411577 ~ 10413980 (+) True G44215
TU65461 lncRNA upstream 25751 10408531 ~ 10408770 (+) True G44199
TU65443 lncRNA upstream 62588 10371526 ~ 10371933 (+) True G44190
TU65442 lncRNA upstream 75722 10358592 ~ 10358799 (+) True G44189
TU65530 lncRNA downstream 72814 10516890 ~ 10523222 (+) True G44246
TU65529 lncRNA downstream 77898 10521974 ~ 10554595 (+) True G44245
TU65532 lncRNA downstream 138273 10582349 ~ 10583681 (+) True G44248
TU65536 lncRNA downstream 155672 10599748 ~ 10600064 (+) True G44252
XR_006251182.1 lncRNA downstream 218044 10662120 ~ 10663689 (+) True LOC122346901
XM_043242108.1 mRNA upstream 3983 10427591 ~ 10430538 (+) True mchr1a
XM_043240983.1 mRNA upstream 292914 10130646 ~ 10141607 (+) True rhot1b
XM_043240984.1 mRNA upstream 292914 10130646 ~ 10141607 (+) False rhot1b
XM_043240985.1 mRNA upstream 294642 10130646 ~ 10139879 (+) False rhot1b
XM_043240989.1 mRNA upstream 303978 10126776 ~ 10130543 (+) True LOC122346392
XM_043241772.1 mRNA downstream 79904 10523980 ~ 10578805 (+) True stx8
XM_043242551.1 mRNA downstream 394372 10838448 ~ 10858010 (+) True LOC122347357
XM_043242126.1 mRNA downstream 426302 10870378 ~ 10882899 (+) True LOC122347096
XM_043242125.1 mRNA downstream 438884 10882960 ~ 10892460 (+) True pik3r6a
XM_043242363.1 mRNA downstream 456930 10901006 ~ 10904025 (+) True glulb
TU65338 other upstream 311087 10122753 ~ 10123434 (+) False atad5b
XR_006251198.1 other upstream 508540 9916051 ~ 9925981 (+) False pecam1b
TU65546 other downstream 426333 10870409 ~ 10873578 (+) False LOC122347096
TU65822 other downstream 971197 11415273 ~ 11420330 (+) True G44478
TU65824 other downstream 971197 11415273 ~ 11420330 (+) False G44478
unassigned_transcript_1089 other downstream 1528895 11972971 ~ 11973044 (+) True trnai-aau_2
XR_006251144.1 other downstream 1558072 12002148 ~ 12010109 (+) False LOC122346564

Expression Profile