RNA id: TU65529


Basic Information

Item Value
RNA id TU65529
length 414
lncRNA type sense_over
GC content 0.49
exon number 2
gene id G44245
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10521974 ~ 10554595 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTGGCCCGTTTGCTGGAGTTTGCTTTAGTTCTTTTGAGCGGAGGCTTTGCAGCGATACCGGTCCCTCCAGTGTTTCTTTCCCCATCCTCGCTGTGCAGCGATCTCGCTCTCGCTCTGATAGGACTGCATCTGCTAAAGTCACCCGTTCCTGCATCGTCCGTGTCACAAACATAAAATGATCTCGAACGAGGTCTTATGTTGCTTCCGTCCTTGTCAGTCTCTCccgttttgtgttttgtgtcctCAGAGCCGTAAAGAGATCGGTAACAGGGTCTGTCACGGTTTATCCGCTCCGCATAATTATTGCCATCTTCCACGTTCCGGACATTCACATTTGTAGAGCCAAAGTGTGCAACATGTGAAGTAACCTGAAGCATTGTAAAGTTAGGCATACGGTAGTTCTTATGTTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65503 lncRNA upstream 77898 10434521 ~ 10444076 (+) True G44225
TU65495 lncRNA upstream 94387 10426411 ~ 10427587 (+) True G44220
TU65489 lncRNA upstream 107994 10411577 ~ 10413980 (+) True G44215
TU65461 lncRNA upstream 113204 10408531 ~ 10408770 (+) True G44199
TU65443 lncRNA upstream 150041 10371526 ~ 10371933 (+) True G44190
TU65532 lncRNA downstream 27754 10582349 ~ 10583681 (+) True G44248
TU65536 lncRNA downstream 45153 10599748 ~ 10600064 (+) True G44252
XR_006251182.1 lncRNA downstream 107525 10662120 ~ 10663689 (+) True LOC122346901
TU65550 lncRNA downstream 334784 10889379 ~ 10892180 (+) False pik3r6a
TU65596 lncRNA downstream 436775 10991370 ~ 10991602 (+) True G44297
XM_043242108.1 mRNA upstream 91436 10427591 ~ 10430538 (+) True mchr1a
XM_043240983.1 mRNA upstream 380367 10130646 ~ 10141607 (+) True rhot1b
XM_043240984.1 mRNA upstream 380367 10130646 ~ 10141607 (+) False rhot1b
XM_043240985.1 mRNA upstream 382095 10130646 ~ 10139879 (+) False rhot1b
XM_043240989.1 mRNA upstream 391431 10126776 ~ 10130543 (+) True LOC122346392
XM_043242551.1 mRNA downstream 283853 10838448 ~ 10858010 (+) True LOC122347357
XM_043242126.1 mRNA downstream 315783 10870378 ~ 10882899 (+) True LOC122347096
XM_043242125.1 mRNA downstream 328365 10882960 ~ 10892460 (+) True pik3r6a
XM_043242363.1 mRNA downstream 346411 10901006 ~ 10904025 (+) True glulb
XM_043241053.1 mRNA downstream 368073 10922668 ~ 10930433 (+) True znf648
TU65338 other upstream 398540 10122753 ~ 10123434 (+) False atad5b
XR_006251198.1 other upstream 595993 9916051 ~ 9925981 (+) False pecam1b
TU65546 other downstream 315814 10870409 ~ 10873578 (+) False LOC122347096
TU65822 other downstream 860678 11415273 ~ 11420330 (+) True G44478
TU65824 other downstream 860678 11415273 ~ 11420330 (+) False G44478
unassigned_transcript_1089 other downstream 1418376 11972971 ~ 11973044 (+) True trnai-aau_2
XR_006251144.1 other downstream 1447553 12002148 ~ 12010109 (+) False LOC122346564

Expression Profile