RNA id: TU65532


Basic Information

Item Value
RNA id TU65532
length 1333
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G44248
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10582349 ~ 10583681 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGCAACATCTGTGTTTAATTAATGGCATTCAGTTTAAACAGCAAATTCCTTAATatgtttaatgattaaaatcagTGGTAATTGTTTAAATGGAAtgtggaaatggaaaaaaaatccatttccaCAAAAGATGAATCTTTGACAAATGTCCTTGCGGTTTTCTTACATATAATTGAAAGCAAATCAGTGAACTTGAATACGATTTCTTAATAAATGATATGATGCCATTCAGTAGCTTTGTAGGTGAAATTTTAGATGTTcactaaaaaaaatgatacagttaaataatactaatttcGATGAGTTTCCCAAATAAAATCATATGACTTCAATAATTGTATAGCGTTTGATTATTTTGTGCCATCGTTGAGTTTAAGCCTAACTTGcatattctgtcatttaaataagaataaaataaaattgtaacagCGTTGAGGGTGAATACGGTAAATCAAATGCTTTTCCTTTCACCCGAAAATCATCGCAAATGAGAGTGAGTAAACTATAACTTTATGTCCGTGTCACCATTTGGAAAAGTGGAAGTCATTTATCTAGTGACTGCAACAGCTGTGGTCAGGAATCCTGTGGTGTTTTATGGGTAATGTGCCAGTGAGGCATAAGGCTGTAAATATCATGCCACAAAGGGCCCAATTCCCCTATAAGTCTTTAGATGACTCCATCTTCAAGTTCAAAACCATTTCCAGCCATTTCCCCCCATGCTGCTGTAGCATAAAGCCCCCCTGATGCTCGAGAAGGCAGAAGGAAAGGGGATTAGGTTTAATGCTCAGAATGTGGGAGTTTATCCTAGATTGTTCACTTTTCTGTAAAGAGGGAGCTGGCCGGCTCTCCGTAAGTGAGGACAACTGTAAATTGAATGCAGCGGGGGACCATATTATCTGGATAAATTCTTAAATGAGTATTAAATGAGTAATGGCAGTGTAGAAAGGAGAACATGCAAAGGCGGTCTGCAGGAGGTGACGGCATTGAGTATTCATCACGTAAGATGCAGCCAGCAATGTGTGGCAGACCTCCTCTCTACACTGCGGGGATCCTCTGAGTTTTTCACCTGAGCATAAATACTTACTGTAATATGCAGTGTTCTTCAAAACATGTCTTTATTGTTACGATTATCACATACCATTTTTACAGCCTGTACGTTAATTACAAAAGCATTTGTGTAGTATAATGATATCCGGCTcaattcaataataaatgtgtacataTGGGTCAATGAcgatgctctttttttttttttctggctgctggatctatttttcttttttaaagaaaaattaaacaatgCCGTTCATAGGTACAGTGGCTCTTCTTTTA

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0071944 cell periphery cellular_component

KEGG:

id description
ko05030 Cocaine addiction
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65529 lncRNA upstream 27754 10521974 ~ 10554595 (+) True G44245
TU65530 lncRNA upstream 59127 10516890 ~ 10523222 (+) True G44246
TU65503 lncRNA upstream 138273 10434521 ~ 10444076 (+) True G44225
TU65495 lncRNA upstream 154762 10426411 ~ 10427587 (+) True G44220
TU65489 lncRNA upstream 168369 10411577 ~ 10413980 (+) True G44215
TU65536 lncRNA downstream 16067 10599748 ~ 10600064 (+) True G44252
XR_006251182.1 lncRNA downstream 78439 10662120 ~ 10663689 (+) True LOC122346901
TU65550 lncRNA downstream 305698 10889379 ~ 10892180 (+) False pik3r6a
TU65596 lncRNA downstream 407689 10991370 ~ 10991602 (+) True G44297
TU65597 lncRNA downstream 412727 10996408 ~ 10997516 (+) True G44298
XM_043241772.1 mRNA upstream 3544 10523980 ~ 10578805 (+) True stx8
XM_043242108.1 mRNA upstream 151811 10427591 ~ 10430538 (+) True mchr1a
XM_043240983.1 mRNA upstream 440742 10130646 ~ 10141607 (+) True rhot1b
XM_043240984.1 mRNA upstream 440742 10130646 ~ 10141607 (+) False rhot1b
XM_043240985.1 mRNA upstream 442470 10130646 ~ 10139879 (+) False rhot1b
XM_043242551.1 mRNA downstream 254767 10838448 ~ 10858010 (+) True LOC122347357
XM_043242126.1 mRNA downstream 286697 10870378 ~ 10882899 (+) True LOC122347096
XM_043242125.1 mRNA downstream 299279 10882960 ~ 10892460 (+) True pik3r6a
XM_043242363.1 mRNA downstream 317325 10901006 ~ 10904025 (+) True glulb
XM_043241053.1 mRNA downstream 338987 10922668 ~ 10930433 (+) True znf648
TU65338 other upstream 458915 10122753 ~ 10123434 (+) False atad5b
XR_006251198.1 other upstream 656368 9916051 ~ 9925981 (+) False pecam1b
TU65546 other downstream 286728 10870409 ~ 10873578 (+) False LOC122347096
TU65822 other downstream 831592 11415273 ~ 11420330 (+) True G44478
TU65824 other downstream 831592 11415273 ~ 11420330 (+) False G44478
unassigned_transcript_1089 other downstream 1389290 11972971 ~ 11973044 (+) True trnai-aau_2
XR_006251144.1 other downstream 1418467 12002148 ~ 12010109 (+) False LOC122346564

Expression Profile