RNA id: TU65597


Basic Information

Item Value
RNA id TU65597
length 941
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G44298
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10996408 ~ 10997516 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agttttttattgctgttattattatatactggGATAGCTATAACTGTAGAgatacattaaaatcattttcagcaACTACAGTATATTCTCTCAGATATTTCAATTCGCCAGTTTATGAGGCATAATCCATACACGTGTACAGTTTTTAGTAATCAAATGGCAGCAAGTTGTCGaatacaaacaaatgttatAGTCttgcttatataaaaaaaacaacattttccattttattttaatattcttttaaaaatcctAAAGACCATACAGTCGAAAATGTCACTGGAATACCAAagtatataaaagaaaatataaagagTGTAATTGTATAAAAAAGGCAAAGTCAATGTGTAGAAGTGAACAAGGCAAAAGGTCATTAATAGTAGCAAAATACAGGACATAATGGTTTAACATGCAAcattatcaatcaatcacttatgtagcgcttttaacaatacagactgtgtcaaagcactgacgCAATCTATCTAACAGGAGAATAGAgagatagtaatgtataatgacgagattaaacacttcatttttatgCAGAGATGCTCTatgtaatcaaatcgacgacaatcgctagaaattaagcgTCCCCGTTATTGCATACTGTGTTTCCATCTGCATCCTTTATAGACCACCAATGCATGAAACACAAGAGGTGAGTATTCTGAAAGCTACGCAAAAGTATATAATGGTTTGCGTGTCTTAATGCGCGTGCTTTTAGAAACGACCGCGGATGCGATCCAGTGGGTCGGTGTTCCACATCTTTGCGTCCCACGCCTGGAACCAGCCAGTGAAGGTTGGGGGCTCAAAGCCTTGCTTGATAGTGACGACCGGGGTGCCACGACGACCGGAGGGGTCAGAATCCACATACTCTTTGGCTATTTATCTGCTCCATTCCGCTCCACCTCATTGGCATCGTTACCAATCCAAAC

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process

KEGG:

id description
ko05164 Influenza A
ko05162 Measles

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65596 lncRNA upstream 4806 10991370 ~ 10991602 (+) True G44297
TU65550 lncRNA upstream 104228 10889379 ~ 10892180 (+) False pik3r6a
XR_006251182.1 lncRNA upstream 332719 10662120 ~ 10663689 (+) True LOC122346901
TU65536 lncRNA upstream 396344 10599748 ~ 10600064 (+) True G44252
TU65532 lncRNA upstream 412727 10582349 ~ 10583681 (+) True G44248
TU65601 lncRNA downstream 3175 11000691 ~ 11001355 (+) True G44301
TU65779 lncRNA downstream 218531 11216047 ~ 11216274 (+) True G44440
TU65782 lncRNA downstream 224113 11221629 ~ 11222047 (+) True G44443
TU65792 lncRNA downstream 240699 11238215 ~ 11238423 (+) True G44453
TU65794 lncRNA downstream 243604 11241120 ~ 11241687 (+) True G44455
XM_043241054.1 mRNA upstream 50144 10943752 ~ 10946264 (+) True gadd45ab
XM_043241053.1 mRNA upstream 65975 10922668 ~ 10930433 (+) True znf648
XM_043242363.1 mRNA upstream 92383 10901006 ~ 10904025 (+) True glulb
XM_043242125.1 mRNA upstream 103948 10882960 ~ 10892460 (+) True pik3r6a
XM_043242126.1 mRNA upstream 113509 10870378 ~ 10882899 (+) True LOC122347096
XM_043241582.1 mRNA downstream 75659 11073175 ~ 11162716 (+) True tgfbr3
XM_043242072.1 mRNA downstream 182312 11179828 ~ 11200924 (+) True znf644b
XM_043242069.1 mRNA downstream 182312 11179828 ~ 11200924 (+) False znf644b
XM_043242073.1 mRNA downstream 182312 11179828 ~ 11200924 (+) False znf644b
XM_043242070.1 mRNA downstream 182312 11179828 ~ 11200924 (+) False znf644b
TU65546 other upstream 122830 10870409 ~ 10873578 (+) False LOC122347096
TU65338 other upstream 872974 10122753 ~ 10123434 (+) False atad5b
XR_006251197.1 other upstream 1071510 9916051 ~ 9924898 (+) False pecam1b
TU65822 other downstream 417757 11415273 ~ 11420330 (+) True G44478
TU65824 other downstream 417757 11415273 ~ 11420330 (+) False G44478
unassigned_transcript_1089 other downstream 975455 11972971 ~ 11973044 (+) True trnai-aau_2
XR_006251144.1 other downstream 1004632 12002148 ~ 12010109 (+) False LOC122346564
TU65993 other downstream 1089883 12087399 ~ 12092455 (+) False G44588

Expression Profile