RNA id: XM_043241769.1


Basic Information

Item Value
RNA id XM_043241769.1
length 3039
RNA type mRNA
GC content 0.47
exon number 6
gene id ntn1a
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10578989 ~ 10835525 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCTACATGCGCGGAGATTTAAGGACCAGACAAGTAAAAGCGCGTGTCCAATACTCACGGAAAAAGAGAGCCAGAACGAGCTGAGATTGTTTTGAGACTTTTCTGAAGTGTTTGAGGGAGGTACAGTGATCGGTGTAGACATTTCTCCAGCTGCGATCTTCTTTCGATGCGAAAGCGTAATTATTGTCGGATCTTTCCGTAGCGGTTTAGCCTAAATACAGAAGTTTGCCCACATGCTGGAGTCCGATTTAGATTCGCATTAGTTTGTTCTTTGGCACCGGTGTCCTATCTGCTGTGGATTGATCACGCTCAGGTTGTCAACTGGTTTTCCATCCGCAAACAGTTGATAGCATCTTCTCGTTCGGACACGGCTGCGTTTCAGAACAGGAGAGACTGAGGAAGGCGCGGGATGATGTTGAGGGTCTCGGATGCTTTGGTCACTTTGGTGACTCTCTACTGTGTGGTCAAAGGCACCGTCGGCGGATACGGCATGAGCATGTTCGCCGCTCAGACCTCCCCACCGGACCCGTGCTACGACGAGAACGGTCACCCCAGAAGATGCATCCCCGATTTCGTCAACGCGGCGTTCGGGAAGGAAGTGCGCGCGTCCAGCACCTGCGGCAAAACACCGAGTCGGTACTGTGTGGTGACCGAGAAAGGGGACGAAAGGCACAGAAACTGCCACACGTGTGACGCGTCGGACCCAAAGAAATATCACCCACCTGCTTACCTAACCGACTTGAACAATCCTCACAATCTCACCTGCTGGCAGTCGGACAATTACATCCAGTATCCTCAAAATGTGACTTTAACATTGTCCCTGGGCAAGAAATTCGAGGTGACCTACGTGAGTTTGCAGTTTTGCTCCCCGCGACCAGAGTCCATGGCTATCTTTAAATCGATGGACTACGGAAAGTCCTGGGTGCCTTTCCAGTACTACTCGACCCAATGCAGAAAGATGTACAACAAGCCCAGCAAAGCCACGATCACTAAGCAAAACGAGCAAGAGGCCATCTGCACAGATTCTCACACCGACATGCACCCTCTCTCCGGGGGGCTGATAGCGTTCAGCACCCTGGACGGGCGACCCTCCGCGCACGACTTTGACAATTCACCCGTGCTTCAGGACTGGGTGACCGCCACTGACATTAAGGTCACTTTCAGCCGACTGCACACTTTCGGAGACGAAAATGAGGATGACTCGGAGCTGGCTAGAGATTCCTATTTTTACGCCGTGTCAGACCTGCAGGTCGGAGGCAGATGTAAGTGTAACGGACACGCGTCACGGTGCGTCAAAGACAGGGACGGAAACCTGGTGTGCGAGTGCAAGCACAATACAGCCGGACCGGAGTGTGACAGATGCAAACCTTTTCACTATGACCGACCCTGGCAGCGCGCAACCGCAAGAGAAGCCAACGAATGCGTCGCCTGCAACTGTAACCTCCATGCGAGGCGCTGTCGTTTCAACATGGAGCTTTATAAACTCTCCGGGAGGAAAAGCGGAGGAGTCTGCCTGAACTGCCGTCACAATACGGCGGGCCGCCACTGCCACTACTGCAAAGAGGGCTACTACAGAGACATGTCCAAGCCCATCTCTCACAGAAAGGCCTGCAAAGCCTGTGATTGCCATCCTGTGGGGGCCGCGGGCAAAACCTGTAACCAAACCACAGGCCAATGCCCCTGTAAAGACGGTGTGACGGGTATCACATGCAACCGTTGTGCTAAAGGCTACCAGCAGAGCCGATCTCCCATTGCCCCCTGCATAAAAATTCCCATTGCTCCACCAACCACCACCGCAAGCAGCACAGAGGAACCTTCGGACTGTGAATCCTACTGCAAGGCTTCTAAAGGCAAGCTGAAGATCAACATGAAGAAGTACTGCAAGAAAGATTACGCTGTTCAGGTCCACATCCTAAAGGCAGACAAAGCCGGCGAGTGGTGGAAGTTCACCGTCAACATCATCTCCGTCTACAAACAGGGAGAAAGCCGAATCCGCAGAGGAGATCAGTTTCTGTGGGTCAGAGCAAAGGACGTGGCCTGCAAGTGTCCAAAGATCAAGCCCGGCAAAAAGTACCTGCTGCTGGGCAATGATGAGGATTCCCCTGGACAGAGCGGGGTGGTGGCGGACAAGGGCAGTCTGGTCATTCAGTGGAGGGACACTTGGGCTCGAAGGCTCCGGAAGTTCCAGCAGCGGGAGAAGAAAGGAAAATGCAAGAAAGCATAGTgagggagaaaagaaaagaagtggCTATCAAGAGCCGGACAGAGAAACATAAGGGaaaggaagagaagaaaaagagggaCTAAACATCgctgctttgaataaaagcatgaagagaatattaacttttttttttctttttttttaaataggaacATGTGTGAAGGAGTTCACGatgcagttttcatttttttttggttttcttcaagATTTGTTTGCTGTTTGCCAATTTTGCACCTGTGTTCAGCATAAAGAAAggtattttatgttaaatggcTTTCAGATACATTTTGGACGGTTTCGGTCTGGTTGAGAATCAGATTAAGCcatatttaatattctaaaaCAACCCGGGGTCGAGGATTGGTACATTAAAAAccggacttttttttttttttttttttttagagcaaaataattaattcaaataaaaatagagcaTGCCTccttattacaaaaataaaatatcttcattagtaagttttgcatttaaaaattcatatgCTCTAActtatgcataatgcataacgGCATCCGAGATGACAACATTTCAGAGATTtcaaaattctgtttttttttaatatgatagATATCAAAACTAATTTGTTCCTCTTCTGCCAATTAAAAATCcgaaaacagtattttaaaaagtacgaCTTTGTAACAACCTCCATGCAGATCTCAcaattttaagtatatttgtgcatattatttttcctgagtattcatttaattaccGTTTCAATTTTCGTTGAGCGGTTTTTCTTTGAATGcagatgtataaaaaaaaaaaaaaaaaaaaaaaaggaacaacaCA

Function

GO:

id name namespace
GO:0016358 dendrite development biological_process
GO:0016525 negative regulation of angiogenesis biological_process
GO:0030516 regulation of axon extension biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0071678 olfactory bulb axon guidance biological_process
GO:0021960 anterior commissure morphogenesis biological_process
GO:0033564 anterior/posterior axon guidance biological_process
GO:0048665 neuron fate specification biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K06843 NTN1; netrin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65642 lncRNA downstream 71050 10508688 ~ 10508796 (-) False usp43a
TU65484 lncRNA downstream 191404 10388044 ~ 10388442 (-) True G44213
TU65481 lncRNA downstream 203268 10376140 ~ 10376578 (-) True G44210
TU65480 lncRNA downstream 206278 10373170 ~ 10373568 (-) True G44209
TU65479 lncRNA downstream 206994 10372640 ~ 10372852 (-) True G44208
TU65673 lncRNA upstream 65277 10900802 ~ 10902107 (-) False G44353
TU65676 lncRNA upstream 113227 10948752 ~ 10985098 (-) False gng12b
TU65786 lncRNA upstream 396926 11232451 ~ 11232784 (-) True G44447
TU65788 lncRNA upstream 398965 11234490 ~ 11234694 (-) True G44449
TU65789 lncRNA upstream 399350 11234875 ~ 11235096 (-) True G44450
XM_043241625.1 mRNA downstream 57150 10517118 ~ 10522696 (-) False LOC122346769
XM_043241624.1 mRNA downstream 57150 10517618 ~ 10522696 (-) False LOC122346769
XM_043241623.1 mRNA downstream 57152 10517118 ~ 10522694 (-) True LOC122346769
XM_043241626.1 mRNA downstream 62882 10509922 ~ 10516964 (-) True cfap52
XM_043241619.1 mRNA downstream 70849 10434204 ~ 10508997 (-) True usp43a
XM_043241050.1 mRNA upstream 95045 10930570 ~ 10943617 (-) False sec16b
XM_043241051.1 mRNA upstream 95045 10930570 ~ 10943617 (-) False sec16b
XM_043241052.1 mRNA upstream 95045 10930570 ~ 10943617 (-) False sec16b
XM_043241049.1 mRNA upstream 95045 10930570 ~ 10943617 (-) True sec16b
XM_043241055.1 mRNA upstream 113167 10948692 ~ 10985132 (-) True gng12b
TU65385 other downstream 434699 10141611 ~ 10145147 (-) False cd7al
TU65247 other downstream 552211 10025578 ~ 10027635 (-) False c6h17orf67
TU65030 other downstream 1307541 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 1308924 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 1312522 9266002 ~ 9267324 (-) True G43896
XR_006251151.1 other upstream 219510 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 219510 11055035 ~ 11069457 (-) False brdt
unassigned_transcript_1087 other upstream 1136955 11972480 ~ 11972551 (-) True trnag-ucc_1
unassigned_transcript_1088 other upstream 1137184 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1090 other upstream 2135558 12971083 ~ 12971154 (-) True trnap-ugg_5

Expression Profile