RNA id: TU65668


Basic Information

Item Value
RNA id TU65668
length 1056
lncRNA type read_through
GC content 0.34
exon number 3
gene id G44350
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10687060 ~ 10895352 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACAgtaagataaatatatatttttggagtTAAAAAATATAGAGAGACATCTAATGCTCACTAAGTCTACAGTTATTTGATAATATTGTTAATCGTAGATTTTAATCCTACTGACCCAaaacttttttatgtaaataagtaagtacatatatacacacacatacataaataaaagtacacgtatacattaatatgttaaaacatattttgttaaaatttaaaCCAGGGGTCACCACATTTGGTCCTGGAGGGTTCCTGTATCTAATCAAGGTTTTACTAGATATACTTCAAATCTGctggacaccggccctccaggatcaagATTGGTGACCCCTAATTTAAACTGGAAATGCTAAAGACTTTGCTACTATTATTCAGTGACACTGTATTAATGCCATTGGCTTATTCATCATTTATCCTAATGTATCAACGTATATTGTAATTATAGATTTAGCAAATCACATAAATACtgtatcattataaataatctGTTATGCTAGGCCTAGATGAGGTAAGGCGTATCCAAATGCTAGCAGTTTAATGCACAGAAACATGGAGCAGAAGCAAGAGCAGAAATCCAAAACGGCAgcaaaaattagaaaaaaacagggaaaaaGGCAGCAAACAGTTAACTATGAACTATAAGAGTCAAAGAACAGAGACGCAATCAGGCTTACTGATATAATCATAATCATGTTGGTAGCTGTCATGTCAATAGACTGTATAAAGACACCTGAGACAATACAGtagcttctacagacactaaacAGCTACACAAGTGCTTCACCAGTTTCACTGAAAGTAATTTGAGAGCGTAGCATAGCAAGACACGCATCCCAGTGCTGAAAATAACTCTTGAACCTGGACTACAGCTGTaaccagaataaaaaaaaaaaaaaaagagagatgagaGCGATATGAAAGAACTCATCAGAGTGTAACCTGACTGTTTTATCCTTTCATAAAGGAGACAACCTCAGGGAAACAGTTACTCTAATTGTAGCTGCAGTCTTCTATAGTCATTCACATCATACAGAAAGCCAGCTTTTATCATTT

Function

GO:

id name namespace
GO:0032400 melanosome localization biological_process

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65655 lncRNA downstream 33690 10646133 ~ 10653370 (-) True G44341
TU65652 lncRNA downstream 104776 10582033 ~ 10582284 (-) True G44339
TU65651 lncRNA downstream 105031 10581409 ~ 10582029 (-) True G44338
TU65650 lncRNA downstream 107214 10578989 ~ 10579846 (-) False ntn1a
TU65642 lncRNA downstream 178264 10508688 ~ 10508796 (-) False usp43a
TU65673 lncRNA upstream 5450 10900802 ~ 10902107 (-) False G44353
TU65676 lncRNA upstream 53400 10948752 ~ 10985098 (-) False gng12b
TU65786 lncRNA upstream 337099 11232451 ~ 11232784 (-) True G44447
TU65788 lncRNA upstream 339138 11234490 ~ 11234694 (-) True G44449
TU65789 lncRNA upstream 339523 11234875 ~ 11235096 (-) True G44450
XM_043241625.1 mRNA downstream 164364 10517118 ~ 10522696 (-) False LOC122346769
XM_043241624.1 mRNA downstream 164364 10517618 ~ 10522696 (-) False LOC122346769
XM_043241623.1 mRNA downstream 164366 10517118 ~ 10522694 (-) True LOC122346769
XM_043241626.1 mRNA downstream 170096 10509922 ~ 10516964 (-) True cfap52
XM_043241619.1 mRNA downstream 178063 10434204 ~ 10508997 (-) True usp43a
XM_043241050.1 mRNA upstream 35218 10930570 ~ 10943617 (-) False sec16b
XM_043241051.1 mRNA upstream 35218 10930570 ~ 10943617 (-) False sec16b
XM_043241052.1 mRNA upstream 35218 10930570 ~ 10943617 (-) False sec16b
XM_043241049.1 mRNA upstream 35218 10930570 ~ 10943617 (-) True sec16b
XM_043241055.1 mRNA upstream 53340 10948692 ~ 10985132 (-) True gng12b
TU65385 other downstream 541913 10141611 ~ 10145147 (-) False cd7al
TU65247 other downstream 659425 10025578 ~ 10027635 (-) False c6h17orf67
TU65030 other downstream 1414755 9271418 ~ 9272305 (-) True G43900
TU65029 other downstream 1416138 9269188 ~ 9270922 (-) True G43899
TU65026 other downstream 1419736 9266002 ~ 9267324 (-) True G43896
XR_006251151.1 other upstream 159683 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other upstream 159683 11055035 ~ 11069457 (-) False brdt
unassigned_transcript_1087 other upstream 1077128 11972480 ~ 11972551 (-) True trnag-ucc_1
unassigned_transcript_1088 other upstream 1077357 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1090 other upstream 2075731 12971083 ~ 12971154 (-) True trnap-ugg_5

Expression Profile