RNA id: TU65779


Basic Information

Item Value
RNA id TU65779
length 228
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G44440
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11216047 ~ 11216274 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTTTTGTGTCTTCCGTGCGTAGTCCTTTGCCCAATAAATATTGTtccttaattaaattaatttaatttaatttaatttccaaaaaagtCAGGATCCAGCCCAAACCTTGTTGAAAAAGACActttttatgatgcattttatgttaaCTATATATGCAACTACCATATTAACCATAATAATTGCCGTCATTCGTTCTACGATACTATTCATGAGCCTggtattttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65601 lncRNA upstream 214692 11000691 ~ 11001355 (+) True G44301
TU65597 lncRNA upstream 218531 10996408 ~ 10997516 (+) True G44298
TU65596 lncRNA upstream 224445 10991370 ~ 10991602 (+) True G44297
TU65550 lncRNA upstream 323867 10889379 ~ 10892180 (+) False pik3r6a
XR_006251182.1 lncRNA upstream 552358 10662120 ~ 10663689 (+) True LOC122346901
TU65782 lncRNA downstream 5355 11221629 ~ 11222047 (+) True G44443
TU65792 lncRNA downstream 21941 11238215 ~ 11238423 (+) True G44453
TU65794 lncRNA downstream 24846 11241120 ~ 11241687 (+) True G44455
TU65795 lncRNA downstream 25520 11241794 ~ 11242025 (+) True G44456
TU65804 lncRNA downstream 29411 11245685 ~ 11245994 (+) True G44465
XM_043242072.1 mRNA upstream 15123 11179828 ~ 11200924 (+) True znf644b
XM_043242069.1 mRNA upstream 15123 11179828 ~ 11200924 (+) False znf644b
XM_043242073.1 mRNA upstream 15123 11179828 ~ 11200924 (+) False znf644b
XM_043242070.1 mRNA upstream 15123 11179828 ~ 11200924 (+) False znf644b
XM_043242071.1 mRNA upstream 15123 11179828 ~ 11200924 (+) False znf644b
XM_043241236.1 mRNA downstream 38335 11254609 ~ 11258567 (+) True barhl2
XM_043241804.1 mRNA downstream 225837 11442111 ~ 11447927 (+) False LOC122346915
XM_043241806.1 mRNA downstream 225877 11442151 ~ 11447927 (+) False LOC122346915
XM_043241805.1 mRNA downstream 226176 11442450 ~ 11447927 (+) False LOC122346915
XM_043241803.1 mRNA downstream 226613 11442887 ~ 11447927 (+) True LOC122346915
TU65546 other upstream 342469 10870409 ~ 10873578 (+) False LOC122347096
TU65338 other upstream 1092613 10122753 ~ 10123434 (+) False atad5b
XR_006251197.1 other upstream 1291149 9916051 ~ 9924898 (+) False pecam1b
TU65822 other downstream 198999 11415273 ~ 11420330 (+) True G44478
TU65824 other downstream 198999 11415273 ~ 11420330 (+) False G44478
unassigned_transcript_1089 other downstream 756697 11972971 ~ 11973044 (+) True trnai-aau_2
XR_006251144.1 other downstream 785874 12002148 ~ 12010109 (+) False LOC122346564
TU65993 other downstream 871125 12087399 ~ 12092455 (+) False G44588

Expression Profile