RNA id: TU65952


Basic Information

Item Value
RNA id TU65952
length 2404
lncRNA type read_through
GC content 0.43
exon number 3
gene id G44568
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11779030 ~ 12264787 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttttTTATGAATTTTTAAGACAGATTGTCtttattcaaaatgtctttgctCGGCAAATGAACAAAGAATCGAGGTATCACCCTTTTTAGATACATTTTCCTTTCCATTAACATGACAGGATTTAAGTTACCATCGCagataaaaaatacaacatggACTGCTTCGCTTCAAACTTTTAAGTTCTTTCTGAAATCAAATGAACGAGTGACTATCACTGAAccacaggaggaaaaaaaaaatgtccgaACGAAAAATATTGAAGGataagaatttttttctttttcatttgatattttaaataagaccGTCTACTTTTAGGTGACCCTTTTTAGATACATTTTCCTTTCCATTAACATGACAGGATTTAAGTTACCATCGCagataaaaaatacaacatggACTGCTTCGCTTCAAACTTTTAAGTTCTTTCTGAAATCAAATGAACGAGTGACTATCACTGAAccacaggaggaaaaaaaaatgtccgaACGAAAATATTGAAGGATaagaattttttctttttcatttgatattttaaataagaccGTCTACTTTTAGGTGCCGGTTTAATCATTATAAACAGTATAACCCGTATAATCTATTAAACGCTGAATTTCTCACTTTGAAACCCTTAAAGTCGTATCATTTGAATTTCAGAGTGCCGAAAAGAAAGGTAAATACAACAGGCTGTACAAGAAACATGAATCCTAACCGTTAGCTGTGCAAATCAAAgtcattcaaataataataataataataataataataataatatatgatgaGAAGAACAATTATATTAAGCGTTGAAACAAAAAGTAGCATTATTATAGCATCAaattgtacataataaataaaattaaaggcATCCAAATCCGGTAGCCATAATAATAAACGtttgaacatttacatttcttacaGTTCTGGGCACCTGCCTTACATCTATTCCGAGATCCGAGCTGGGATCCGAGGAACCTCTCGTAGATGGTGAAAAGTTCATGTCCACGCGGCCTCAGTATAAATGTCTTGCTCATTCCTCTCTTCTTATGTACATGCATTGCTGTATTCAAGTTTTCAAAAGAGGAGaccgtttgtttgttttttagcgGTGGAGTCACATAGCAGCGGCGTGTGCTGATGAGTACGGGTCAATCCCACTCTTGGTCATACCCGGGAACAGTATGTAGGCAACAGGCGGCTGTAAACTCGACGCCGACCATGCGGTGCAGTTACACGGCACCACGTACCCGGGGTTTGTGGGCGACGGGTGGGTGTGGGTGTGCTGGCTGGGGCAGCCCAGGCTCCCGAATGCGCCGTTCTGGTATCCCAGAGATGATGCGTAAGGTAAAGTGCTGGTGGCCAACGTGTGGGGGGGCATCTCTGTCATCTTCTGGATAGCGCTGGAGCTGAACTGGCTCGGGTCGAGGAAGGAGTAAGGGGCTGATGTGGGAGGCAGGAACGCGCGGGCTTTTTCCGAGGAACCTAAGAGCGAGTCCGTGGCGGAGACCGGAAGTCCTTTCAGGTGATCCGTGTCGCCCAGGTAGGGCAGAGGAAACACATACCTGTCCTTCTTGAGGAGGTTCTTGGGCTTGCGCCTGGGTCTGTATTTGTAGTCTGGGTGTTCTTTCATGTGTTGAGCCCTCAGCCTTTTGGCCTCGTCGATGTACGGTCGCTTCTCGgattcagagagcagcttccaCTCGGCGCCGAGTCTTTGCTTATTTCTGAATTGTGCATTTTGGGATTCTCTTGAGCCATTTTCCTCCTCTGGCCTCTTGACCAGACCATGAAGGCGTTCATGGGTCTCTTGATGTGATCTACCGGCTTTGACATTTTTTACGGTTCCctgttaaaataacaacaaaaaaaaaagttcttcgACCAACCAAGAGAAAATAGTATTCACCTGTCCTGCCGACAGACACGGATCATGCCACTTCTGGAAAGCCGGAGGAGTAGGAAAACGGCATCAATGGGGGGGAAAATCCACTAATTCTTCCGCGTTCGTCGCAAAGTTGAAAGATGTCTCTTCTTCGAAACGACGCTATTCGGCTGAGAGAAGAACAGCCACGCGCGCCACAAAATCCAGCGCGGCAAAGCGAAGTTTCCGCGATCTGTTTGcgcgcttctttttttttttttctctcggaGGATTCTCGCCCCGCGAAGCACCTGGCTGGGAAATGAGGAGAAGCGCGTGAATGAGAGCCAAAAGCGGTGAAGTTCAAAGGCTGGGCTGGTTCGCTCTGCACGCGATCTGACATAATCGCAGGGCGTTCACGCGCCAACCTGAGCGCCCAATCAGCTCTGAGAAAGCCACATAATACCTaccaaaatatgtatattacaacacaaacaaagatcGGGGAGGAAAAGGAGGTGACTCTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251221.1 lncRNA upstream 73104 11689692 ~ 11705926 (+) True LOC122347449
TU65889 lncRNA upstream 135332 11641081 ~ 11643698 (+) True G44521
TU65890 lncRNA upstream 135332 11641081 ~ 11643698 (+) False G44521
TU65838 lncRNA upstream 350200 11427845 ~ 11428830 (+) True G44483
TU66049 lncRNA downstream 212337 12477124 ~ 12482182 (+) True G44604
TU66050 lncRNA downstream 212337 12477124 ~ 12482182 (+) False G44604
TU66052 lncRNA downstream 228166 12492953 ~ 12493642 (+) True G44606
TU66058 lncRNA downstream 256986 12521773 ~ 12526890 (+) True LOC122347491
TU66062 lncRNA downstream 299305 12564092 ~ 12671665 (+) True G44611
XM_043241804.1 mRNA upstream 331103 11442111 ~ 11447927 (+) False LOC122346915
XM_043241073.1 mRNA downstream 174313 12439100 ~ 12444241 (+) True LOC122346457
XM_043241038.1 mRNA downstream 199755 12464542 ~ 12469417 (+) True LOC122346426
XM_043242840.1 mRNA downstream 260253 12525040 ~ 12526957 (+) False LOC122347491
XM_043242035.1 mRNA downstream 439858 12704645 ~ 12731083 (+) True LOC122347050
XM_043242034.1 mRNA downstream 446195 12710982 ~ 12731083 (+) False LOC122347050
TU65822 other upstream 358700 11415273 ~ 11420330 (+) True G44478
TU65824 other upstream 358700 11415273 ~ 11420330 (+) False G44478
TU65546 other upstream 905452 10870409 ~ 10873578 (+) False LOC122347096
TU65338 other upstream 1655596 10122753 ~ 10123434 (+) False atad5b
XR_006251196.1 other upstream 1855873 9916052 ~ 9923157 (+) False pecam1b
TU66085 other downstream 501396 12766183 ~ 12780920 (+) False crocc2
TU66063 other downstream 815823 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 843948 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 1129442 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 1707386 13972173 ~ 13979005 (+) False meltf

Expression Profile