RNA id: TU65960



Basic Information


Item Value
RNA id TU65960
length 3118
lncRNA type inter_gene
GC content 0.40
exon number 4
gene id G44574
representative False

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11937101 ~ 11977411 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


tttttttttttttttttGTCCagatacattttcaatttttattttgctttttggaCAGTTTATTTTCCAGTGTTATCCATAATCGTTTcctttgacatttttgcataattctTATAAGGCTATTAAAAGGGCCATTGCTATGGTTTCAGACCAACCTGCATAGCAACTGGAAGACAAAAAGGGGCTGGACACTGACCCATTAGCAAGAATGAGTAACACATGACATTACTTGACATTTCATTGGCACAAAATGGTCTTTTTTTCCCATCCTTCCAAATATTATAATCTTtaataaacatgatttctgaatatcaaaaacaaaacaaaaaatagaagCAGTTTAGTGTACGTTTTAGAGACTTTGGGAACCTTGGGACTCCTACTTGACGAGCGACTACATCCCTGGGACTTCCAAAGCAAAATGGCAGTTTGAAAATACTTCTGTAGTGAAGAGTCCCTCTTTAAGTTGGAAAGCTGTAAAGGCTGCATGGAATCACTTCCCAGAGTTAGGGAATTAGGAACGGGAAAGAGACAATTGAAATGTCTGCAACAAAACGGCTACCCTAGGCAACTAGACAGAAGTACGGCTGGTTACCCATTTCCTATGAATTATTCTGACTTCAACCAGAAGCAATATCTTTCAGAGGTATACAGTATATCTTTCCCCAAACCCCATTGCAAAGGCAACTATGAGACAGAGCAGCTTAATAAACCCAAGAAATAACttttgtaatgaaataatgtttttgtaatggcGTCATATCAAAAATTAAACCTGGATTGTTGCAGACCTGAAGCATGTCCAGGactacttttgttttccttcaatTTGTGATTCTCTCTGAAAATGCAAACATGTTGAATCACTTCACACCGATTCAGGTGAACTCTGGGTCACTGAACCTTTATAAGGGCCACTGAGAGAATCATCAAGACCCTTATTAGCAGAAGTAATGTGAGCAGAGGAAATGTGCTGATATATTTAGGGGCCAAGGTAAGTGGTCCGTCCACATCAAAAGGGGTCAAATGAGGGATTATAGTAAGGGGGAACCAGGGGTTGCAACATAACCATTGAAGGACACACATTTCAAAAACGTTTGGGTCCCCATGGAGATGATCTCGCATTAGTCACAGGTGCACCAAAACTGGGGAATTCCTCAGAACTGCTCATATCGGGAGCCTAAAACCAGAAAAGACAAGCGATGACCACTTCATTATTAGAATTATGCCTTACGCAACTCACAAATGATTACAATTTTCCAGCGCCATATATGACCCTGAGCACACAGTATTAGTTTACCTTTTCATTGCCAGTGGCCCAAGGAGCCTCCCGTACAACAAAGCCCTTAGATGGGCCTCGTGGTTCTTCCATGCTGGAGGCAGTGGAACCAGAAGGCTTCATATAGGCCATTTTGGCTTCGTTTTCAACCACATCAGCCATCTGagagaaaagattaaaaattacctttttgtcaatttaataatattcgTTTAATTTCGTTTAATTAATGTAAGCATGTGCTTACATATTCCTCCTCCAGGTTTAGAAGATGATCAATGGCTTCATCAACATGTTCTGGACGGCCAGTCACAGTCACTAAATTGGGATCCGCAGCACCACTCTGAGGGAATCGAACATCAACCTAAATTCATCCATGATTTTGCGAATTCCCTTGCCACGTGCCCCTATGATGCGAGCATGGACTCTACTGTCCAGAGTGATGTCCTCTGAGATCATTTCCTCCAGTTCATCCACTATAGCCTGAATGGCATCACGTGCCGCCACAGCATTCTGCTCATAGCCAGTAATGGTAATCTGATCCTAGaagtcCCTGGTTCTCATCATTTTTCTCTGGAAATTGAATGTTGACCTCATGCTCATTGCGGATTTGGGTGATTATGGCACCCTTGCGTCCAATGATTTTGGGGTGATACTTGGGATCCACAGTGATGGTCAGCTTGAAGCTCCTGAGAGCCTGTGgccaaaaatatacacatttataatatataatcattatgaCTACAAAGCGGAGAGCATTTGCACAAGCATTTAATTTGCTGTTCAGGCCTCAAACTCACCCGATCCTCCTGTTCGGCCTGTAGCTCTTTGACACGCTCAAGAAGACCCTCTTTAGCGCGATCAAGGTGGGAGACCAGGCCAGTAATGGAGATAATGTCAGACTGTAACTCATGAGCAGGCACTTGAATATTAACCTGggagaaaaatacatttgtcagGACCGTATgaagaaaatattgttaaaatctTTACTTACAAATTCACTGATTTTACATGAATTAACACCTGATTTACAATTCAACTGACATCAGCCGTGAAGAGACTAACCTCAAACTCGTCCATCATCTTGCGGATTCCACTTCCTTTCTGACCAATGATGTAGCGATGAAGCTCAAAAGGCACTTCCACCGAAATGGTCACAGGAACCAAAGCCTAAAAGGACAAATTTGTTATAGCATTTCACAAAAAGCACCTAAagcatacaaacaaaaacttctGCATAGAAGGAAAATTTACAAGGGAGTCATACCTTTAGCGCTTCAACAGCAGCTTCACATCTCTCTTTGCGTCCAGAGAGCACAATGACATCACACTTCTTTGGGACTGAAGGATCAGCAGGCTCCTTCACTTCTCCATTAGCCTCTCCATTCTCCTGAACTGGAGCATCAGCTGATGGAGCTGCGGGAGCAAAACAAAGTTTGCAGATTAAGTATGCAACAGATAGACACAAAGAGATGCCTCAGaaagttttagattaaagcctCTGTAAAACGCAAATGTTCAGAGGGGAATGCAGGATGCcttgaaaatattcaaattcttaaaaacaTAACCTTTCCCATAACTATTGCTTtacctataaataaatatagaagaGCCTATTGTTCTGGAGAACTATATAAACAAACTCctgaaaaccaaaaaataaaatggtaaataaccaaaaaataaagGGAAAGTTGTGGGTTCTATTTTAAAGATCAAGAAATATTGGATTTCCATCATGACCTTTTAATTATTGAGATTCACTGTGGTACTTACCTTGCTGGTCATCTCTGTCTGGAAACTTGATCTGCACATTGTGGTCTTTAGTGATCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006251221.1 lncRNA upstream 265655 11689692 ~ 11705926 (+) True LOC122347449
TU65889 lncRNA upstream 327883 11641081 ~ 11643698 (+) True G44521
TU65890 lncRNA upstream 327883 11641081 ~ 11643698 (+) False G44521
TU65835 lncRNA upstream 542830 11427944 ~ 11428751 (+) False G44483
TU65972 lncRNA downstream 16608 11993558 ~ 11994137 (+) True G44575
TU65995 lncRNA downstream 110449 12087399 ~ 12092455 (+) True G44588
TU66023 lncRNA downstream 177372 12154322 ~ 12155432 (+) False scly
TU66030 lncRNA downstream 181112 12158062 ~ 12159895 (+) False scly
TU66049 lncRNA downstream 500174 12477124 ~ 12482182 (+) True G44604
XM_043241253.1 mRNA upstream 169785 11791670 ~ 11801796 (+) True dzip1l
XM_043241254.1 mRNA upstream 170829 11791670 ~ 11800752 (+) False dzip1l
XM_043241806.1 mRNA upstream 523654 11442151 ~ 11447927 (+) False LOC122346915
XM_043241284.1 mRNA downstream 25197 12002147 ~ 12009882 (+) False LOC122346564
XM_043241283.1 mRNA downstream 25197 12002147 ~ 12009880 (+) False LOC122346564
XM_043241282.1 mRNA downstream 25199 12002149 ~ 12010539 (+) True LOC122346564
XM_043241856.1 mRNA downstream 34145 12011095 ~ 12055010 (+) True farp2
XM_043241857.1 mRNA downstream 34145 12011095 ~ 12055010 (+) False farp2
TU65822 other upstream 551251 11415273 ~ 11420330 (+) True G44478
TU65824 other upstream 551251 11415273 ~ 11420330 (+) False G44478
TU65546 other upstream 1098003 10870409 ~ 10873578 (+) False LOC122347096
TU65338 other upstream 1848147 10122753 ~ 10123434 (+) False atad5b
XR_006251196.1 other upstream 2048424 9916052 ~ 9923157 (+) False pecam1b
XR_006251144.1 other downstream 25198 12002148 ~ 12010109 (+) False LOC122346564
TU65993 other downstream 110449 12087399 ~ 12092455 (+) False G44588
TU66085 other downstream 789233 12766183 ~ 12780920 (+) False crocc2
TU66063 other downstream 1103660 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 1131785 13108735 ~ 13109366 (+) True G44645

Expression Profile