RNA id: TU66030


Basic Information

Item Value
RNA id TU66030
length 1304
lncRNA type sense_over
GC content 0.38
exon number 3
gene id scly
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12154268 ~ 12159899 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGGAGGAGATAAGATTCATTTTAACAGCCATTTTCCTGGTTCAGACATTTTGCCCAACACGTGTAACATATCCATTTTGGGAAGGGGACTTCAGGGGCGTAGAGTGCTGTCCACCTGTAGGAGGTTGTTGGCCAGTGTGGGTGCTGCCTGCCACTCAGACAGAGAAGATCAACCTTCCCATATTCTTCTGAGCTGTGGGATTCCATATCATGTGGCTACCAACGCTTTGAGGATCAGTGTGGGTAGAAGTACCTCCCATGAAGATGTGGACATTGTCGTGGAGGATCTGAGAGACACTGTAGAGCAACTGGAGCGAATGAACTAGCACCAGGGATATTTTACctgcctctgtgtgtgtatatgtatataaccaaaaaagttttagttttgcaCATAAATTCTGAAATAAGTGTGGAGTTCAGATTTCAGGGTCATCGTCAGGTTGCACTATATCGATCTAAGAGCTCTTTATTTAgcagaatataatatttaatgtgactCTTATCAGGTGGTGTGTCATGAGACTAGAGTTCAGGATTCAGACATTGTCAGGttgctctatatatatatatttaatcagaaTATAATGTTCAACGTGCATATTACTTGGtaaaacataatatatggaACTTCAGGGAATTTAGCTCATAAatagtaaaagaaaatacataaagCAGCTTGCAAACGGAGGTGTGCAATGTGTAAAGTCCACAAAGTCCAATTACAGACTGACTTATAGAGTGTGTCACTTTGCAAAAAGTGATCGAattgtttatttctgtcattgGGAAACTAACCAACCACtgcacaaaatatgaaaatcagcTCCCCATAACAGAACAAATTAcactgcaaaatataatttttggtaTGTATTGCACACTCGTATTTGCATATGAGTGTTGGCTTTGGTCATTTCaggtcagtttttatttttaacatagttAAAATTGCCTCAGTTATTTGGTTTTGATACTCATTAATTTATCCCTTCTGATTTTATATTGAATGCACTGTTGtatgttgtattttaaaaactgtttcatAATTGAATATTGAATTGTTCTTATTATGTTGTAGATGtccataacatttttttcatggaATCAACAGAGACCTGTTCGTTTGAACTTGCCGGCTGCACTTGCGATGGAGCGTGCGCTCTGAGAATGAGACGGAGATATCCGTTACCTGTACAACAAAGACGCactagcattattaaatgagCTAAATGGACTCTCTTTAAACATCTAAGCGCTGATCTGATCTCCCCTGATGCTGAATCATTAAAGTTCATATGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66023 lncRNA upstream 2630 12154322 ~ 12155432 (+) False scly
TU65995 lncRNA upstream 65607 12087399 ~ 12092455 (+) True G44588
TU65972 lncRNA upstream 163925 11993558 ~ 11994137 (+) True G44575
TU65963 lncRNA upstream 180651 11976827 ~ 11977411 (+) False G44574
TU65966 lncRNA upstream 181112 11937101 ~ 11976950 (+) True G44574
TU66049 lncRNA downstream 317229 12477124 ~ 12482182 (+) True G44604
TU66050 lncRNA downstream 317229 12477124 ~ 12482182 (+) False G44604
TU66052 lncRNA downstream 333058 12492953 ~ 12493642 (+) True G44606
TU66058 lncRNA downstream 361878 12521773 ~ 12526890 (+) True LOC122347491
TU66062 lncRNA downstream 404197 12564092 ~ 12671665 (+) True G44611
XM_043241410.1 mRNA upstream 5098 12097684 ~ 12152964 (+) False kif1aa
XM_043241073.1 mRNA downstream 279205 12439100 ~ 12444241 (+) True LOC122346457
XM_043241038.1 mRNA downstream 304647 12464542 ~ 12469417 (+) True LOC122346426
XM_043242840.1 mRNA downstream 365145 12525040 ~ 12526957 (+) False LOC122347491
XM_043242035.1 mRNA downstream 544750 12704645 ~ 12731083 (+) True LOC122347050
XM_043242034.1 mRNA downstream 551087 12710982 ~ 12731083 (+) False LOC122347050
TU65993 other upstream 65607 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 147953 12002148 ~ 12010109 (+) False LOC122346564
unassigned_transcript_1089 other upstream 185018 11972971 ~ 11973044 (+) True trnai-aau_2
TU65822 other upstream 737732 11415273 ~ 11420330 (+) True G44478
TU66085 other downstream 606288 12766183 ~ 12780920 (+) False crocc2
TU66063 other downstream 920715 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 948840 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 1234334 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 1812278 13972173 ~ 13979005 (+) False meltf

Expression Profile