RNA id: XM_043241013.1


Basic Information

Item Value
RNA id XM_043241013.1
length 2510
RNA type mRNA
GC content 0.43
exon number 14
gene id scly
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12154268 ~ 12159899 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTCCGACCGTCTAAGAGGAGGAGGGGTTTAGTCATGTACACTTCCGGTTCAAAGTAGTAAAGCGTGCCGGTGCTGTCTGCCGCATCATCAGTTTGAACTGTGAATTATTGACAAGATATACGCTAAAGAGCAGAAGAGAGTGTGATCTAGATAATGGCTGAAAAGACCCCTGTCATCCTGGGTCATAATCTATGGGGAACCGAAACACATCATTGTGGGTCTGAcctgcatcatcatcatcatcatcatcatcatcatcatgtgtCTGATGGGCCAGAGAGAATATATATGGATTACAACGCCACCACGCCAGTGGATCCAGAGGTGGTCAGCGTTATTACTGATGCTTTAACTGTGGCGTGAAATCCCAGCAGTAATTACCTACCAGGTCTAAAAGCTAGAGACATTATTTACCATTCCAGAGACACTATTGCCAGGATGGTTGGTGGAAAAGCAGCAgacattatttttacttcagGAGGAACTGAGGCCAATAATCTGGTGTTTCACACAGCTGTGGAGCACTTCAGGCTGAGCAAGGCTTCTGCAGAGGGAGACGTGAACAGTGAGCAGCTAAATGGAAGAGGCTCCCCGCCTCATATTATCATCTCCAATGTCGAGCATGACTCCATCCAACTCGCAgctaaacatttgttaaaagaGGGTAAAGCAGATGTCACATTTGTGCCAGTGTCCAAGGTGACGGCACGGGTGGAGGTCGAGGATGTCATTGCAGCGATTCGTCCCACCACCTGCCTGGTGTCGGTCATGCTGGCCAATAATGAAACAGGCATTATTATGCCAATTAAAGATATTTGTCAGAGGGTGAGGGAAGTGAACAAACAGAGGGCAGCATCAGCTCCCAGAATCCTCCTTCACACGGATGCTGCACAGGCCATCGGAAAGATAAGAGTGGATGCACATGAGCTGGGAGTAGACTATATTACCATTGTAGGGCACAAGTTTTATGGCCCTCGAATTGGCGCTTTGTTTGTGAATGATCCTGGACCCACGACTCCGGTTTACCCTCTGTTTTTTGGAGGAGGACAAGAGCGCAACTTCAGGCCAGGAACTGAGAACACAGCAATGATAGCCGGTCTGGGAAAGgCTGCAGAATTGGTCAACTTAAATCTAGTGGAGTATGAAGCCCATTTCCTGGACATACGATTCTATCTAGAGCAGAAGCTGCTTGTAAgctGTCTTGGAGGAGATAAGATTCATTTTAACAGCCATTTTCCTGGTTCAGACATTTTGCCCAACACGTGTAACATATCCATTTTGGGAAGGGGACTTCAGGGGCGTAGAGTGCTGTCCACCTGTAGGAGGTTGTTGGCCAGTGTGGGTGCTGCCTGCCACTCAGACAGAGAAGATCAACCTTCCCATATTCTTCTGAGCTGTGGGATTCCATATCATGTGGCTACCAACGCTTTGAGGATCAGTGTGGGTAGAAGTACCTCCCATGAAGATGTGGACATTGTCGTGGAGGATCTGAGAGACACTGTAGAGCAACTGGAGCGAATGAACTAGCACCAGGGATATTTTACctgcctctgtgtgtgtatatgtatataaccaaaaaagttttagttttgcaCATAAATTCTGAAATAAGTGTGGAGTTCAGATTTCAGGGTCATCGTCAGGTTGCACTATATCGATCTAAGAGCTCTTTATTTAgcagaatataatatttaatgtgactCTTATCAGGTGGTGTGTCATGAGACTAGAGTTCAGGATTCAGACATTGTCAGGttgctctatatatatatatttaatcagaaTATAATGTTCAACGTGCATATTACTTGGtaaaacataatatatggaACTTCAGGGAATTTAGCTCATAAatagtaaaagaaaatacataaagCAGCTTGCAAACGGAGGTGTGCAATGTGTAAAGTCCACAAAGTCCAATTACAGACTGACTTATAGAGTGTGTCACTTTGCAAAAAGTGATCGAattgtttatttctgtcattgGGAAACTAACCAACCACtgcacaaaatatgaaaatcagcTCCCCATAACAGAACAAATTAcactgcaaaatataatttttggtaTGTATTGCACACTCGTATTTGCATATGAGTGTTGGCTTTGGTCATTTCaggtcagtttttatttttaacatagttAAAATTGCCTCAGTTATTTGGTTTTGATACTCATTAATTTATCCCTTCTGATTTTATATTGAATGCACTGTTGtatgttgtattttaaaaactgtttcatAATTGAATATTGAATTGTTCTTATTATGTTGTAGATGtccataacatttttttcatggaATCAACAGAGACCTGTTCGTTTGAACTTGCCGGCTGCACTTGCGATGGAGCGTGCGCTCTGAGAATGAGACGGAGATATCCGTTACCTGTACAACAAAGACGCactagcattattaaatgagCTAAATGGACTCTCTTTAAACATCTAAGCGCTGATCTGATCTCCCCTGATGCTGAATCATTAAAGTTCATATGCTCTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01763 SCLY; selenocysteine lyase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65995 lncRNA upstream 61813 12087399 ~ 12092455 (+) True G44588
TU65972 lncRNA upstream 160131 11993558 ~ 11994137 (+) True G44575
TU65963 lncRNA upstream 176857 11976827 ~ 11977411 (+) False G44574
TU65966 lncRNA upstream 177318 11937101 ~ 11976950 (+) True G44574
TU65960 lncRNA upstream 177318 11971581 ~ 11976950 (+) False G44574
TU66049 lncRNA downstream 317225 12477124 ~ 12482182 (+) True G44604
TU66050 lncRNA downstream 317225 12477124 ~ 12482182 (+) False G44604
TU66052 lncRNA downstream 333054 12492953 ~ 12493642 (+) True G44606
TU66058 lncRNA downstream 361874 12521773 ~ 12526890 (+) True LOC122347491
TU66062 lncRNA downstream 404193 12564092 ~ 12671665 (+) True G44611
XM_043241394.1 mRNA upstream 1304 12097680 ~ 12152964 (+) True kif1aa
XM_043241395.1 mRNA upstream 1304 12097680 ~ 12152964 (+) False kif1aa
XM_043241398.1 mRNA upstream 1304 12097680 ~ 12152964 (+) False kif1aa
XM_043241396.1 mRNA upstream 1304 12097681 ~ 12152964 (+) False kif1aa
XM_043241400.1 mRNA upstream 1304 12097681 ~ 12152964 (+) False kif1aa
XM_043241073.1 mRNA downstream 279201 12439100 ~ 12444241 (+) True LOC122346457
XM_043241038.1 mRNA downstream 304643 12464542 ~ 12469417 (+) True LOC122346426
XM_043242840.1 mRNA downstream 365141 12525040 ~ 12526957 (+) False LOC122347491
XM_043242035.1 mRNA downstream 544746 12704645 ~ 12731083 (+) True LOC122347050
XM_043242034.1 mRNA downstream 551083 12710982 ~ 12731083 (+) False LOC122347050
TU65993 other upstream 61813 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 144159 12002148 ~ 12010109 (+) False LOC122346564
unassigned_transcript_1089 other upstream 181224 11972971 ~ 11973044 (+) True trnai-aau_2
TU65822 other upstream 733938 11415273 ~ 11420330 (+) True G44478
TU66085 other downstream 606284 12766183 ~ 12780920 (+) False crocc2
TU66063 other downstream 920711 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 948836 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 1234330 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 1812274 13972173 ~ 13979005 (+) False meltf

Expression Profile