RNA id: TU66049


Basic Information

Item Value
RNA id TU66049
length 369
lncRNA type inter_gene
GC content 0.59
exon number 2
gene id G44604
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12477124 ~ 12482182 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tggtgagtccgtgcgaggagtgcggcggtgtgtccgggggtggtgtagcggtgaatccggtgagtgcagcggtgagtcgtctcggtgtttcccgtgcttaataacgtgagggagtccactgtgaggtattaggggaagtagctcaggcaggcccgtcacgttgtagcttctgggagacaaagaaagagacaacaggttagctcgCGTTACCGGAGTCTTGTGGCTCaatgaagccgtcgcctggccgggcttatctggcccgcggctgatgagctccaggtgtggcgaatccgtcgttgagtggctggtgtaggtgttccgtgtttgttcccagggcaacgctgatcgatcctcgggacgctcgtcaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65952 lncRNA upstream 212337 11779030 ~ 12264787 (+) False G44568
TU65951 lncRNA upstream 212337 11848412 ~ 12264787 (+) True G44568
TU66030 lncRNA upstream 317229 12158062 ~ 12159895 (+) False scly
TU66023 lncRNA upstream 321692 12154322 ~ 12155432 (+) False scly
TU65995 lncRNA upstream 384669 12087399 ~ 12092455 (+) True G44588
TU66052 lncRNA downstream 10771 12492953 ~ 12493642 (+) True G44606
TU66058 lncRNA downstream 39591 12521773 ~ 12526890 (+) True LOC122347491
TU66062 lncRNA downstream 81910 12564092 ~ 12671665 (+) True G44611
TU66075 lncRNA downstream 182638 12664820 ~ 12699577 (+) True G44622
TU66087 lncRNA downstream 303937 12786119 ~ 12788171 (+) False crocc2
XM_043241038.1 mRNA upstream 7707 12464542 ~ 12469417 (+) True LOC122346426
XM_043241073.1 mRNA upstream 32883 12439100 ~ 12444241 (+) True LOC122346457
XM_043241013.1 mRNA upstream 317225 12154268 ~ 12159899 (+) True scly
XM_043241410.1 mRNA upstream 324160 12097684 ~ 12152964 (+) False kif1aa
XM_043242840.1 mRNA downstream 42858 12525040 ~ 12526957 (+) False LOC122347491
XM_043242035.1 mRNA downstream 222463 12704645 ~ 12731083 (+) True LOC122347050
XM_043242034.1 mRNA downstream 228800 12710982 ~ 12731083 (+) False LOC122347050
XM_043241695.1 mRNA downstream 258637 12740819 ~ 12760408 (+) True LOC122346842
XM_043241014.1 mRNA downstream 278678 12760860 ~ 12765699 (+) True LOC122346411
TU65993 other upstream 384669 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 467015 12002148 ~ 12010109 (+) False LOC122346564
unassigned_transcript_1089 other upstream 504080 11972971 ~ 11973044 (+) True trnai-aau_2
TU65822 other upstream 1056794 11415273 ~ 11420330 (+) True G44478
TU66085 other downstream 284001 12766183 ~ 12780920 (+) False crocc2
TU66063 other downstream 598428 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 626553 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 912047 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 1489991 13972173 ~ 13979005 (+) False meltf

Expression Profile