RNA id: TU66052


Basic Information

Item Value
RNA id TU66052
length 231
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G44606
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12492953 ~ 12493642 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGCGCCAGGCGGCCTTCCTGAGAAGCTCTTTTACCCAGCTGCGGGCCTTCGCTGACAGGAGTCTGTCGGACATGCGAGCCGAGTGCGCGGTGGCTGGCCATCGTCTTCAAACAGCCTGTGTGAATTTGGAGGCTAGCATGAGCCAGCCTTGTACCCCTGCTATCAGTGGAGTATCTGCATTGGAGAATCAACTAAGAGGCAAACTAAAAGATGCTATGCAGCTGCAAGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66049 lncRNA upstream 10771 12477124 ~ 12482182 (+) True G44604
TU66050 lncRNA upstream 10771 12477124 ~ 12482182 (+) False G44604
TU65952 lncRNA upstream 228166 11779030 ~ 12264787 (+) False G44568
TU65951 lncRNA upstream 228166 11848412 ~ 12264787 (+) True G44568
TU66030 lncRNA upstream 333058 12158062 ~ 12159895 (+) False scly
TU66058 lncRNA downstream 28131 12521773 ~ 12526890 (+) True LOC122347491
TU66062 lncRNA downstream 70450 12564092 ~ 12671665 (+) True G44611
TU66075 lncRNA downstream 171178 12664820 ~ 12699577 (+) True G44622
TU66087 lncRNA downstream 292477 12786119 ~ 12788171 (+) False crocc2
TU66066 lncRNA downstream 589738 13083380 ~ 13084230 (+) True G44615
XM_043241038.1 mRNA upstream 23536 12464542 ~ 12469417 (+) True LOC122346426
XM_043241073.1 mRNA upstream 48712 12439100 ~ 12444241 (+) True LOC122346457
XM_043241013.1 mRNA upstream 333054 12154268 ~ 12159899 (+) True scly
XM_043241414.1 mRNA upstream 339989 12097684 ~ 12152964 (+) False kif1aa
XM_043242840.1 mRNA downstream 31398 12525040 ~ 12526957 (+) False LOC122347491
XM_043242035.1 mRNA downstream 211003 12704645 ~ 12731083 (+) True LOC122347050
XM_043242034.1 mRNA downstream 217340 12710982 ~ 12731083 (+) False LOC122347050
XM_043241695.1 mRNA downstream 247177 12740819 ~ 12760408 (+) True LOC122346842
XM_043241014.1 mRNA downstream 267218 12760860 ~ 12765699 (+) True LOC122346411
TU65993 other upstream 400498 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 482844 12002148 ~ 12010109 (+) False LOC122346564
unassigned_transcript_1089 other upstream 519909 11972971 ~ 11973044 (+) True trnai-aau_2
TU65822 other upstream 1072623 11415273 ~ 11420330 (+) True G44478
TU66085 other downstream 272541 12766183 ~ 12780920 (+) False crocc2
TU66063 other downstream 586968 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 615093 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 900587 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 1478531 13972173 ~ 13979005 (+) False meltf

Expression Profile