RNA id: TU66058


Basic Information

Item Value
RNA id TU66058
length 1586
lncRNA type sense_over
GC content 0.44
exon number 7
gene id LOC122347491
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12521773 ~ 12526957 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTTCTCATTGgTGCTTTAAACCTGCCGTCCATCGCTGGGGATGGTGCTGGGAAGTCTGATCATGAAACGTTGGGGTTGTCGTTCAGAGCCATTCCACGCTTCTCTGTTGCTAATGCTCACCATCTCCATCTTCTGCTGTATACCCCTCTTCTTCATGGGCTGCCATACAAGATGTTGCTGGTGTTCTGAGCGTTAATGGGCTTCAGCCGTCCTGTAGTGCCAATTGCTCCTGTCCCAGCAGCGCGTTTAACCCAGTGTGTGGGAAAACAACATTGAATACATCTCGCCCTGCCATGCTGGCTGCACAAACTTCACCTTGGATCCCAACAGCCAATACAGAGTCCAGAGTTACAGTAACTGTCAGTGTATTCCCGGTGTGGCCACAGCCAAGCCTGGCCCTTGTGCCAACAGCTGCCCTCACTATCTCCTGCCTGTGATGCTCCTTATATCTCTGGCTGGATTTATAGCCAGCTTAACACACAACCCCATCTACATGATGGTGCTCAGGTCAGTACCTTCAGAAGAGAAGTCCTTCGCAATCGGCGTACAGTTTCTGCTTCTGAGGGTTCTGACCTGGCTGCCAGCTCTGGCTCTATTTGGGATGACCATAGATTCCACGTGTATCTGGTGGAAAATTGCTTGTGAGAAAAGCAAGGATGTGGTTACTATGACAACAACCTCCTTAGAAACAGGTATCTAGGACTGCAGGTGGGCTTTAAGACGGTAGGCATTGCGCTCCTGGCATTTATTGGCTGGAAAATGCAGCGGACCAGAGAGTACAGCTTAGAGAACAAGCCAGAGGGACCCCTGTGATGCCTCGACTCTGCTTAGCCCATCGCAGCTCACTTTTGAGAGCCCTCTCAGTGAATTGAGCCCCTGGATATTTCTCGTCAGAAACCCCTCCTCCTTTCAACATCTGGCTGGAAATGCGATGAATTCAGTTTGGACTTTTCTCAAGTTGTGCACTAACTTCTTGGGTATTTATTTCCACCTGCGGAGCAATAACTGGACAGATTCAGGGATTTTCCAACTTCACACAGTTTTTCTGGTATTAATAATTAACTACGTATAGCACTATAAACAGTTTATCATACTTTATAGCCACGGCTCTCGTCAACGGACGGTGGCGTCTTTGGAGAGGTCACAGAACTTGTGACAGAAATGTCTGTATGTTGTCCTTAAGATTTGGTTAATACGCAATTTGatgattcatttcttttctttttttggtgtaTGTGTATTTGAAGACTATGTGAAGGATGCGGGGCGCTCTTTATACCCAAATGCACACAGATACACACGAGTGTGTCGAATATCAAGCTGTGTGTGAGTTGAGGCGTGTGTAGcttcaaataattattgtagCCATGTAGTAGATTTCAAATTATACTTTCAAAtgtgaagacattttgaaaataagcaTCAAAAgtttgtacaatatatttttatacctgataatgctgttttattatacactttgtgcttgtttttaattttttaatttttttttgctcttaaaacaaatgacaacaTGCTTTTATAATTGCTGCTTGGAGTAATGAATCGTGACTTTCTAAGTCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66052 lncRNA upstream 28131 12492953 ~ 12493642 (+) True G44606
TU66049 lncRNA upstream 39591 12477124 ~ 12482182 (+) True G44604
TU66050 lncRNA upstream 39591 12477124 ~ 12482182 (+) False G44604
TU66030 lncRNA upstream 361878 12158062 ~ 12159895 (+) False scly
TU66023 lncRNA upstream 366341 12154322 ~ 12155432 (+) False scly
TU66062 lncRNA downstream 37202 12564092 ~ 12671665 (+) True G44611
TU66075 lncRNA downstream 137930 12664820 ~ 12699577 (+) True G44622
TU66087 lncRNA downstream 259229 12786119 ~ 12788171 (+) False crocc2
TU66066 lncRNA downstream 556490 13083380 ~ 13084230 (+) True G44615
TU66120 lncRNA downstream 566966 13093856 ~ 13095910 (+) True G44640
XM_043241038.1 mRNA upstream 52356 12464542 ~ 12469417 (+) True LOC122346426
XM_043241073.1 mRNA upstream 77532 12439100 ~ 12444241 (+) True LOC122346457
XM_043241013.1 mRNA upstream 361874 12154268 ~ 12159899 (+) True scly
XM_043241414.1 mRNA upstream 368809 12097684 ~ 12152964 (+) False kif1aa
XM_043242035.1 mRNA downstream 177755 12704645 ~ 12731083 (+) True LOC122347050
XM_043242034.1 mRNA downstream 184092 12710982 ~ 12731083 (+) False LOC122347050
XM_043241695.1 mRNA downstream 213929 12740819 ~ 12760408 (+) True LOC122346842
XM_043241014.1 mRNA downstream 233970 12760860 ~ 12765699 (+) True LOC122346411
XM_043241197.1 mRNA downstream 238931 12765821 ~ 12805700 (+) True crocc2
TU65993 other upstream 429318 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 511664 12002148 ~ 12010109 (+) False LOC122346564
unassigned_transcript_1089 other upstream 548729 11972971 ~ 11973044 (+) True trnai-aau_2
TU65822 other upstream 1101443 11415273 ~ 11420330 (+) True G44478
TU66085 other downstream 239293 12766183 ~ 12780920 (+) False crocc2
TU66063 other downstream 553720 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 581845 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 867339 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 1445283 13972173 ~ 13979005 (+) False meltf

Expression Profile