RNA id: TU66063


Basic Information

Item Value
RNA id TU66063
length 640
RNA type TUCP
GC content 0.41
exon number 5
gene id smx5
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13080565 ~ 13082119 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGAGGTGAAGAACCCGGCCGCTCTCTTTGATGACGTGTATGATCTGAAGCACAAAACCGCGTGAAAATGCTCTTCTACTCGTTCTTCAAGTCACTGGTTGGCAAAGACGTTGTGGTGGAGCTGAAAAATGACTTGAGCATTTGTGGAACATTACACTCAGTTGATCAGTATCTGAATATCAAACTGACAGATATCAGTGTCACTGATCCAGAGAAATATCCACACATGtTGTCGGTAAAGAACTGCTTTATTCGTGGATCAGTAGTGCGATATGTTCAGCTTCCTGCGGATGAAGTGGACACACAGCTGCTACAGGATGCTGCACGCAAAGAAGCTATGCAACAGAAACAATAATTTGAGGATAGTATTTTTGTTGGACTGTTCACAAACGTTATCTGTGGAGCCTtgtagatgtttttgtttttctacctGAAACTTACGTAAAGTTTGGATTCCCCCCCTCTAGATATTCATTGACCTCTGTTGTCATGAGGCCCTTTAACTGGGATGACTTTTGAGTTTGTAGtgatttttgtgcttttaataatgtttggttctgtattgcatccaaaatgttaaaatgttttagttaagTTCTTCGACCTACTATAAAGGAATAAAGTCTCTTCCTCCACCGtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66087 lncRNA upstream 292439 12786119 ~ 12788171 (+) False crocc2
TU66075 lncRNA upstream 381033 12664820 ~ 12699577 (+) True G44622
TU66062 lncRNA upstream 408945 12564092 ~ 12671665 (+) True G44611
TU66058 lncRNA upstream 553720 12521773 ~ 12526890 (+) True LOC122347491
TU66052 lncRNA upstream 586968 12492953 ~ 12493642 (+) True G44606
TU66066 lncRNA downstream 1261 13083380 ~ 13084230 (+) True G44615
TU66120 lncRNA downstream 11737 13093856 ~ 13095910 (+) True G44640
XR_006251172.1 lncRNA downstream 19160 13101279 ~ 13103566 (+) True LOC122346816
XR_006251171.1 lncRNA downstream 20153 13102272 ~ 13103566 (+) False LOC122346816
TU66449 lncRNA downstream 231434 13313553 ~ 13313854 (+) True G44872
XM_043241810.1 mRNA upstream 564 13065838 ~ 13080046 (+) True inpp5d
XM_043241608.1 mRNA upstream 16181 13058859 ~ 13064429 (+) True gpr17
XM_043241607.1 mRNA upstream 16181 13060546 ~ 13064429 (+) False gpr17
XM_043241601.1 mRNA upstream 22489 13039523 ~ 13058121 (+) True LOC122346752
XM_043241602.1 mRNA upstream 42330 13024547 ~ 13038280 (+) True sap130a
XM_043241840.1 mRNA downstream 37076 13119195 ~ 13279180 (+) True LOC122346939
XM_043241841.1 mRNA downstream 45396 13127515 ~ 13279180 (+) False LOC122346939
XM_043242168.1 mRNA downstream 231938 13314057 ~ 13333574 (+) True tprg1
XM_043241158.1 mRNA downstream 268402 13350521 ~ 13385990 (+) True tp63
XM_043241155.1 mRNA downstream 268411 13350530 ~ 13389446 (+) False tp63
TU66085 other upstream 299690 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 988155 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 1070501 12002148 ~ 12010109 (+) False LOC122346564
unassigned_transcript_1089 other upstream 1107566 11972971 ~ 11973044 (+) True trnai-aau_2
TU65822 other upstream 1660280 11415273 ~ 11420330 (+) True G44478
TU66125 other downstream 26616 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 312110 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 890054 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 998814 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 2154092 15236211 ~ 15238200 (+) False pomgnt1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU558577 True 476 TUCP 0.40 2 CI01000340 2930091 ~ 2931800 (+)
eurasian perch (Perca fluviatilis) TU137408 False 758 TUCP 0.43 5 NC_053120.1 41106689 ~ 41108955 (-)
bowfin (Amia calva) TU137408 True 5433 lncRNA 0.44 1 CM030134.1 4515937 ~ 4521369 (-)
mexican tetra (Astyanax mexicanus) TU137408 True 960 lncRNA 0.47 3 NC_035908.1 7496737 ~ 7498497 (+)