Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_043241811.1 |
| length | 685 |
| RNA type | mRNA |
| GC content | 0.41 |
| exon number | 5 |
| gene id | smx5 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_056704.1 |
| NCBI id | CM032073.1 |
| chromosome length | 27473687 |
| location | 13080565 ~ 13082119 (+) |
| genome version | ASM1883169v1_2021_tiger_barb_Genome |
| species | tiger barb (Puntius tetrazona) |
| id | name | namespace |
|---|---|---|
| GO:0043928 | exonucleolytic catabolism of deadenylated mRNA | biological_process |
| GO:0000244 | spliceosomal tri-snRNP complex assembly | biological_process |
| GO:0071013 | catalytic step 2 spliceosome | cellular_component |
| GO:0046540 | U4/U6 x U5 tri-snRNP complex | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0017070 | U6 snRNA binding | molecular_function |
| GO:0019901 | protein kinase binding | molecular_function |
| id | description |
|---|---|
| K12621 | LSM2; U6 snRNA-associated Sm-like protein LSm2 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU66087 | lncRNA | upstream | 292394 | 12786119 ~ 12788171 (+) | False | crocc2 |
| TU66075 | lncRNA | upstream | 380988 | 12664820 ~ 12699577 (+) | True | G44622 |
| TU66062 | lncRNA | upstream | 408900 | 12564092 ~ 12671665 (+) | True | G44611 |
| TU66058 | lncRNA | upstream | 553675 | 12521773 ~ 12526890 (+) | True | LOC122347491 |
| TU66052 | lncRNA | upstream | 586923 | 12492953 ~ 12493642 (+) | True | G44606 |
| TU66066 | lncRNA | downstream | 1261 | 13083380 ~ 13084230 (+) | True | G44615 |
| TU66120 | lncRNA | downstream | 11737 | 13093856 ~ 13095910 (+) | True | G44640 |
| XR_006251172.1 | lncRNA | downstream | 19160 | 13101279 ~ 13103566 (+) | True | LOC122346816 |
| XR_006251171.1 | lncRNA | downstream | 20153 | 13102272 ~ 13103566 (+) | False | LOC122346816 |
| TU66449 | lncRNA | downstream | 231434 | 13313553 ~ 13313854 (+) | True | G44872 |
| XM_043241810.1 | mRNA | upstream | 519 | 13065838 ~ 13080046 (+) | True | inpp5d |
| XM_043241608.1 | mRNA | upstream | 16136 | 13058859 ~ 13064429 (+) | True | gpr17 |
| XM_043241607.1 | mRNA | upstream | 16136 | 13060546 ~ 13064429 (+) | False | gpr17 |
| XM_043241601.1 | mRNA | upstream | 22444 | 13039523 ~ 13058121 (+) | True | LOC122346752 |
| XM_043241603.1 | mRNA | upstream | 42285 | 13024547 ~ 13038280 (+) | False | sap130a |
| XM_043241840.1 | mRNA | downstream | 37076 | 13119195 ~ 13279180 (+) | True | LOC122346939 |
| XM_043241841.1 | mRNA | downstream | 45396 | 13127515 ~ 13279180 (+) | False | LOC122346939 |
| XM_043242168.1 | mRNA | downstream | 231938 | 13314057 ~ 13333574 (+) | True | tprg1 |
| XM_043241158.1 | mRNA | downstream | 268402 | 13350521 ~ 13385990 (+) | True | tp63 |
| XM_043241155.1 | mRNA | downstream | 268411 | 13350530 ~ 13389446 (+) | False | tp63 |
| TU66085 | other | upstream | 299645 | 12766183 ~ 12780920 (+) | False | crocc2 |
| TU65993 | other | upstream | 988110 | 12087399 ~ 12092455 (+) | False | G44588 |
| XR_006251144.1 | other | upstream | 1070456 | 12002148 ~ 12010109 (+) | False | LOC122346564 |
| unassigned_transcript_1089 | other | upstream | 1107521 | 11972971 ~ 11973044 (+) | True | trnai-aau_2 |
| TU65824 | other | upstream | 1660235 | 11415273 ~ 11420330 (+) | False | G44478 |
| TU66125 | other | downstream | 26616 | 13108735 ~ 13109366 (+) | True | G44645 |
| TU66465 | other | downstream | 312110 | 13394229 ~ 13409912 (+) | True | G44887 |
| XR_006251224.1 | other | downstream | 890054 | 13972173 ~ 13979005 (+) | False | meltf |
| unassigned_transcript_1264 | other | downstream | 998814 | 14080933 ~ 14081004 (+) | True | trnag-ucc_2 |
| TU67192 | other | downstream | 2154092 | 15236211 ~ 15238200 (+) | False | pomgnt1 |
