RNA id: TU66075


Basic Information

Item Value
RNA id TU66075
length 317
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G44622
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12664820 ~ 12699577 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGATACGTGTTGTCAAAGCTGTCGTACATGAAGCGTGTGATCAGGGAAGTCTTCCCCACTCGGCAATTCCGATGTGTCACTCACCGCTTTGCTCTCCAAGAAAGACGAGTTTGAATTTCCTTAAAGGGTTTCCAAAGTCACTACCCACAGACATGTTTGAGGGCTTGTTTTTAACAGCGTGTTCCCACCGGTGTGAATGTCTGGATGGGGCAGCGCGATGGAAAAAGCGGCGCTCCTGTGCGTTAGGAAACGGGAATGCTGCACTGGATCGGCTGTCAGGCTGGGCAGCTGCGCATGCGCGGCCTCAcctctcccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66058 lncRNA upstream 137930 12521773 ~ 12526890 (+) True LOC122347491
TU66052 lncRNA upstream 171178 12492953 ~ 12493642 (+) True G44606
TU66049 lncRNA upstream 182638 12477124 ~ 12482182 (+) True G44604
TU66050 lncRNA upstream 182638 12477124 ~ 12482182 (+) False G44604
TU66030 lncRNA upstream 504925 12158062 ~ 12159895 (+) False scly
TU66087 lncRNA downstream 86542 12786119 ~ 12788171 (+) False crocc2
TU66066 lncRNA downstream 383803 13083380 ~ 13084230 (+) True G44615
TU66120 lncRNA downstream 394279 13093856 ~ 13095910 (+) True G44640
XR_006251172.1 lncRNA downstream 401702 13101279 ~ 13103566 (+) True LOC122346816
XR_006251171.1 lncRNA downstream 402695 13102272 ~ 13103566 (+) False LOC122346816
XM_043242840.1 mRNA upstream 137863 12525040 ~ 12526957 (+) False LOC122347491
XM_043241038.1 mRNA upstream 195403 12464542 ~ 12469417 (+) True LOC122346426
XM_043241073.1 mRNA upstream 220579 12439100 ~ 12444241 (+) True LOC122346457
XM_043241013.1 mRNA upstream 504921 12154268 ~ 12159899 (+) True scly
XM_043241416.1 mRNA upstream 511856 12097684 ~ 12152964 (+) False kif1aa
XM_043242035.1 mRNA downstream 5068 12704645 ~ 12731083 (+) True LOC122347050
XM_043242034.1 mRNA downstream 11405 12710982 ~ 12731083 (+) False LOC122347050
XM_043241695.1 mRNA downstream 41242 12740819 ~ 12760408 (+) True LOC122346842
XM_043241014.1 mRNA downstream 61283 12760860 ~ 12765699 (+) True LOC122346411
XM_043241197.1 mRNA downstream 66244 12765821 ~ 12805700 (+) True crocc2
TU65993 other upstream 572365 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 654711 12002148 ~ 12010109 (+) False LOC122346564
unassigned_transcript_1089 other upstream 691776 11972971 ~ 11973044 (+) True trnai-aau_2
TU65822 other upstream 1244490 11415273 ~ 11420330 (+) True G44478
TU66085 other downstream 66606 12766183 ~ 12780920 (+) False crocc2
TU66063 other downstream 381033 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 409158 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 694652 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 1272596 13972173 ~ 13979005 (+) False meltf

Expression Profile