RNA id: XM_043241197.1


Basic Information

Item Value
RNA id XM_043241197.1
length 7324
RNA type mRNA
GC content 0.50
exon number 38
gene id crocc2
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12765821 ~ 12805700 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atgctacttttgttttcctgtatgaatgtaaaatttgaatttgaattgaaatataTCTTATACTAATGTTGTTGGCAACCATGGAATTTTTCGTTTGACtgaatttatgttgtttttactcagaaaaaaaattgtattaggAAGTTACAAAATCGTGTCGTTGTAAACCCTTGTTAGTTTTCAGTAATTGCAATGGATATTTAACAAAGTGCCAACAAAGACCGGAATAAACAGTGTTGTATTTGTGCAGCCGTGACCTGCAGCGTCTGTAACTATGGAAGCCAGAAAGCTTGCGTTTTAATTCTCATGACAACAAGCCAGAGCGTCCGGTTTCCCTGTCAACCAGAGGCACCCACCTCGCGCCTGTGTCGTGATTGCTACTTTCCCACTTGTGGCTATATTCTAGCACGAACTGTTTTGCGTTAACGTGCTTATGTGCGTTATTTAAGCGTTGATATTTATTGGAGAGTGCGCTGTGCGCGCTTTGTCAACAGTGCAAAACTTTTAAAGCCTGTGAGACTTTATTAGCGTGCGTATCACCCCGTTAAACTCTGTCGAAGCgtttaaaacactttaagaaTTGAGGACAATTGGAAAAACGTCGCTGTCCGTTTAAGTGTGTTGGCTCGCTACCAGTTTCCAGATGAGTTGTGAAGGGGATCAAGGACTGGAAGCCGTGATTCAGAAGCTGGAGGAGACACTGCTTAACCCAGATAGCGGTGGAGAGGAGAAGACTTACACTCTGAGGGGAGATGAAGAGGAGTCCAACGTCACGCCCGTTCCCGCTCGCATCCGTGAGATCATCACCAGAAACCTGGCTGATACGCCCACAGGCGAGAGCAGCGAGGTGGAGGAGAACCGGCTGCCGAAGGATCTGCCTTCTCAGATGTGCGCAGACAGAGACCAGCTGCTTAGCAGGCAGGCTGCTCTCACTAGCCGGCTGGAGCAGATGCTGTTGCAGCAGTCAGGAGATTCAGACCAGCAGAGTCTGTTTGGCGCAGAGCAGGGTTGGCTAAGAGAGGAAGGACGATCTTATAGGCTGAAGCTCCAGGCCTTTCAGGAGAGCCAACACAGACAGGCTCAGCTGGTGCAGAAACTACAGGCAAAGTTGCTCCAATATAAGAGGAGATGTGGAAATCTAGAGCAGCAGGTGCTGGAGAAAACCTCAGAGTCAGAGAAACTGAGGCTCTCTCTCCAGTCTCACCTAGACTCTTCAGCACACCGTCTCCAGCGTTTTGAGCAGGAACACAATATGGATGTCCAAAGTAAACTCGCTCTGTTGGAGGATGAGCAGAAACGGTGTTCTGGTTTGAGCCAGGTCAATGCACTGCTCCGGGAACAACTCGAACAAGCCAACGAAGCCAATCAGGCCCTGACGGAAAGCCTGCAGAAGGCACGAGAGGAGGCAGAGCAGAGGGACACGCGACTCAGGAGGGAACTTGAGATGAATACCTCCCGAAACGGCCGCGAGCAAGCCCGTGTGCGATCTCTGTGGCGCCAGGCGGCCTTCCTGAGAAGCTCTTTTACCCAGCTGCGGGCCTTCGCTGACAGGAGTCTGTCGGACATGCGAGCCGAGTGCGCGGTGGCTGGCCATCGTCTTCAAACAGCCTGTGTGAATTTGGAGGCTAGCATGAGCCAGCCTTGTACCCCTGCTATCAGTGGAGTATCTGCATTGGAGAATCAACTAAGAGGCAAACTAAAAGATGCTATGCAGCTGCAAGCCCGCTTTGACGCAGAGAAAGTAGAGCTTAACTCTAGGATCCTGGAATTGGGTGAAATGGTAAAGCAGCTGAGAGCACAGAACATTGAGAAGGAAAGCAATCTGACAGCACTGCGGAGCAGCTTGGACAGGATGGAAATAAATCGGTCCGAAGACCGAACTGAGAGGGATGCCTTACGTAGTGAGATCAGCAGTCTGCAACAGTTACTGCACAACATTAATCAGGTGGTTAGTGGTGAAAGTTCCTCAGACTTATCAAAAGATCAGCACCCATCTGCAGGATCTATTTCCTCTTCTCAACGAGACAGTATTCCAGTATCTGTGCAAAAAGCCCTCTTACAGCGGCAGGCACAAATTCAGGAGCTGCAGGGACGTCTGGATGCTTCCCAAGAGCAGGTTGCCACCTTGCGAGATCAGCTGCGTATGGGGGAAGATGAAACCAGAAGCCTGGAACAAAGAATCCGGGAACTGCAGCAAGAAAATCAACTTCTGGAGAGATCTGAGGAGGACAGCACTAGAGATGCCCTAAGATACCGCACCTCACTGGGCATAGTAAACAGTGAAAAAGGAGAGCTTGAGAGGCAGCTCTCAGGCCTGCAGCAGCAGCTGGaatgcacacaaacagagcAGGAAGCTTTGAGAAGCTCTTCTCTGGATGTTCAGAGGCAGAGAGACCTCCTCAGGCAGCAGAGGGAGGACCTGAGGCAGCTGGCTCGAGAACGCTCTGAATCCGAGAGGGGaCGACACTCTCTGGAGCAGCTGGAGATGAGACACTCGGATGTGCGCAAAGAGCTGGTCACACTAAAAGAAGCTCTGAGTCAGCTGACTTTACAGAAAGAGGTTTTGGAGGATGAAAAGAGCACTCTTGCACAGGCTCTCTCCAGGGCGGAGGCCCAGAATGCTGAGCAGGAACTGGCGCTCACTAAACTACGAAGTGAAGATGCAGGGCTACAGGACTCCCTGGCCAAGATGGGAGCCCTGAGTGAGGGATTGGCTAAAGATAAGGTCGAATTGAACCGTCTTCTCTTACAGGTCGAAGCTGAAAAGGCTGAGCTCGGCGAACGTAAACGGGAAGCAGAGCTAGAGCGAGCGGCAGCCAGAGAGGAGCTAGCCAGACTTCAGCAGGAGCTGTTAGACCTAACGGCAGAGAAACGTGCTCTGGAGGCCTCACATATTCACCTTCAAGAGAGTCAAGTGACCCAGGAAGCAGAGTGCAACCTCCTACAGAAGGAGAAAAGTTCAGCCCTGGAGCAACACGCCCAGGTCAGTAAGCAGAAGCAAACCCTGCAGGGACAGCTGAACACATGTCATAGAGAAATGGAGCTCAGTGCTGCCTCGCTAAAGAAGACTTGCAAGGAAAGAGATGAACTGGCGAGAGACAAAGCCAATCTCACAGTGCAGCTCACCTCAGAGCAACGTAAATCCAAGGCCCTGGCCCAAGACCTGGCCGCTCTGCGgGCTGAGAGAGAGTCTCTAGAGTCAGGCCTGTTGGACAGGCAGGAACTGGCCTCAATGCTAGAGGATGACCGGGCTAGGCTAGATGGAGAGAATACTAGTCTACAGCAGGCTAACGAGACTTTGACGCgTGAGCTGTCTAATGTTCACAGTGAACTAGAGCAGCAAATGACCCGGGCATTGCAGGAGAAACAGGCTTTAGAGTTGAAGCTTGCTCAGGTCGAGAGAAACGCACAACAAACCCTCATTACAACACAGCAAAGCCATCAGGATCAACTGCATGCGGAGCGAAAGCACAAGGAGCGCATGCGTGTGGAGTTGTGTGCACAGAGGGAGCAGGCAGAGTCGCAGCTGCGGGCTGAGTGCAAGGAGCTGCGCATGCAGAGTCGCAGAGTTCAGCAACAGCTGCAGGAAGAACTTGCCAAGCTGCAGCAGCACTGTACAGAATCCCTGCTGCAGGCCGAAAGCCATaaacagcagGTTCTATCTGAGAAGGAGGTAGAGAAAGCTACTCTTACTGAGCGCATAATTACCCTCGAGCGTGACATAGAGACAGCTGCCCTTGAAAAGGATCGTATGCGTAGAGACTTCCTGAGCAAACAGGAGCAGGACAAGgaCACACTTTTAGGTTTGCAGGTAGAGCTTCAGGACCTACGCTCTCGTTTCGGGGAGTCTCTGAGTTCCCGTGAAGTTTCAGAGCGCAGCTTAAATGACCAGATCAGAGAGCTTTCTATGCAGAAGCAGGAGTCTCAGCAAGAGGTGGAGCGTTTGAGAAGGGAACTGAATGAGGTGGAGGAGAGCAGGGACTCTGGCCGTAAGGAACTAATCGAGGCCCACAGAGAGCTGAGGGAGTGTTTGCAGGACAGGGACGCCCAGCGGCATGAGGGCTTGGAACTGAAGAGAGCTCTAGGAGATGTTGCGAGAGAAAAAGAGGCCATCCATGCTTCCAATCATGAACTCCGAACAGCTGTGAAGAGAGCCGAGTTTGAAAACAACAGtttgaagCGAGTGGGAGAAGAAAAGGATCAGAGGCTGGCAGTGCTGGAAGAATGTAAATCCTCCCTACAGCAGGAGGCGCTGAAGCTGAGAACCAACATGCGTGAACTTGAGAAATCTCGCTTGCAGGCACGCAGGGAACTGCAGGAACTGCGCAGACAGGTGAAGACATTAGAGGGTCAGTGCACTCAACAAGGGCAAGAGTTGAGTGACATGCAGGCCAGACTGACCCAGGAAGAGCATAGAGAGGAGGAAATGAGAAAAGAGACATTTGCTCTCCGACAAAGAGTACTGGAATGTGATGCTGGCAGAGAAGCAGCTCTGAAGGAGGCTGCAGGCTTGCAGCGGCGTGTAGCAGAACTGGAAGAAGTGCAGCGCCAGGAGAAAGAATTGCAACAACAACAGGATGCCAATCTTCAGGAGAGCCAAATGAAGCAGCGTGAGGAGGTTGCTCGCTTGGAGGGGGCACTGCAGGAAGCCCAGGCCCAGCTCAGGGAGTTTGGGCTGAAGGTAAGTCTAGCTGAGGCCCGGGCCCAAGGGCTGGAAGAGCAGCTGGGACAGAATGACGCCATACGGAGAGATCTTGAGCACAGGTTGAATGTTCTCAGTTCAACCCTGAAACGTACACTTGGAAGCGGACGTGGAAGATGTTCACCCGCACCTGGGGAACGCGGGCGGAGTCCCTCACCATGGAGAACTCGATCACCTGTGAAAGGTGAACCCAAGTCAGATGAGCCTGGGGTAAGTGGATTGCTGGTGTGTTCTTTGTCCCCCTCCCACGGAGAAGATGGAGAATTGGATTTGGACTCAGTTCACATGTTGCTACGTAACTTCCAGCAAGAGCTCAgggacacacagagagagcggGATGAGGCCCAATCACAGGTGCATAATCTCAGCAAGCAGGTAGAAAGCCTGCAAGCCAGTCAGGAAAGAGGCAACACACGTGTTCAGATGCTGAAACAATCTCTCAGAGAGCTTGAGGATGGAAAGCGTGAGCTGGCCAAGCATTTAGAGGGGACACAAGCATCACTCGCCTTACGGGATGAGGCGGTTCAGCGTGGGGAGTTACAGAATAGGATTATGAGTGAAGAGTTGGCCAAAATGAAGAACAGCCAACAGATAACTGAGGCAGAAGCCAAAGCACTGAAGGAGAAGCTGGAGCGCTCCCAGGCCACTGAGGAAAGTCTGGAGGCTGAGCGCCGCCGTATGAAGGAGACCTGTGAGACAGCGGAAGCTCGAGCTGCCAGGCTGGAACTCACACGCCGGGGGTTGGAGGGAGAGCTGCAGCGTGCCCAGCTCCGAGCCACAGAGACAGAGTCGGAGGTCAGCTCACTGCAGGACCGCCTCAACAATCTCCGCAGAGAACTGGGAGACAGCGAAGAGCGTGCTGCCCTCCTGAAGGTTGAGGGTGAGAGGCTGGCAACCGCCTTGGCACACACAGAACTGCAGGAAAGCCAGTTAAGGGAGCAACTGCAGTCAATGACTGCATCCTTGACTGAGAGCAATGCTGCTATAGGAGCAGCACAAGAACAGGCCGCACAGCTACAGCGAGCTCTCACAGCCAATGAACATGACCGGAAGATGCTGCAGGAAAGGTTGGATAAGACACGAGAGGCTCTAACAAACAGTAGGAAGCAAAATCAAGGCTTGAGTGAGAAACTACAGATCCTGCAGAGAAGCCAGGAAGAGTCTGAACTCAGGGTCTCTGAACTGGACAAACAGACACGAGGCCTGCAGGAGGCTGTGAGACAAAGGCAACAGGCTAAGCAGGAGGTGCAAGAGAGCTATGCACTCTTGCAGGGACAAAAGGATCAGCTTCAGGAGCAGGTGGCTACCCTGCAgaccactgcacatcggctacAAGGAGACAAAACTGAGCTGGAGAGGGCACTTCTCCGTCTGGAAAAAGACAGGTCATCTCTAAAGCGTACCCTGGAGAAGGTAGAAAAAAATCGCCAAAGAAAGGAGGCAGAGATATTGCATGTGGAGCGTGAGAGAGAACAGCAAGAACAAAAGATACGAAATCTAGAGCAAGATCTAAGCGAGACGCAGGCCGAAATTCACACTCTACAGTCACAGATCTCTATTTTGGAGCAAACTCACTCCCAGAGGCTCCTGGAAGTGACTGCTCGCCACAGGCAAGAACTGGACTTAGAGACAGAGCGGATGAGGGACTCCCAGCAGCAGGCAGAGAGAGCACTGGAGGCTCGAGAGAAAGCTCACCGCCAGAGGGTCCACTGCTTGGAGGAACAGGTTTGCACACTAAAAGAACAGTTGGAGCAGGAGATGAAGAGGAGGCAAGCGTATATGAAGCAGATGATGAGATTGGGGCTCTAAAAACCATAGCGCTTTTTCAGCCCATGGTGACCAactaacagatttttttttaccaaaaatctTTATAGTCTCTCAAAGGCCTATAACCAATGAAACAGGGCCTGTTCTAACATGAATGGACTTATGTATAATGAAAtgttacacatacacacacacatactttagATTTAAACCTCACAAAATCACTGGTCTCAGGGAGAATTGTTGGACTACATTTGCACAAATACTTTAAGTAATCCTGATCCACACCATAAGAACccaataacaacaaacaaagaGATCACTGTTTCACCAAATGCTTCTCAATTGCCAAATTGTTTTAAGGATTTGTGCAGCAAACTGTTGAAACAGACCATAAATCTACCTTAAGTCTATCCCTGTTCATCTTAGAGTATTAAGCATAGTCTGAATTCTacaccacacacacttttaaacatCTGTACCTACCTTAAACATTACACCCTAGTTCCCCCAAACTGTTTTGCAAACCACAAAATTATGCTATTTTCTTTCTACTTTGTAGCTTACATGATTGCTTTGATAAATTAAACCATTTAGAGAATAATCATCTTGTTTTAGTTAGCACCAATCAGCTAAAATACAGTTAGAGTAAATCAGGACAGATAATGAGTCATATATCTTAACTACAAATGCTTtcttaaaagtaatgttttcatATGGTGTTTTTCTAATTATGGGTGTTAAAACAATTTCTGTTTCATAATCAGTGCTATGTTGTAACTATTAGAAAACTGATTTGTTTCATCAGAAAGTAATTTTTATGAGTCAATAAAACCatacaaacaagaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66075 lncRNA upstream 66244 12664820 ~ 12699577 (+) True G44622
TU66062 lncRNA upstream 94156 12564092 ~ 12671665 (+) True G44611
TU66058 lncRNA upstream 238931 12521773 ~ 12526890 (+) True LOC122347491
TU66052 lncRNA upstream 272179 12492953 ~ 12493642 (+) True G44606
TU66050 lncRNA upstream 283639 12477124 ~ 12482182 (+) False G44604
TU66066 lncRNA downstream 277680 13083380 ~ 13084230 (+) True G44615
TU66120 lncRNA downstream 288156 13093856 ~ 13095910 (+) True G44640
XR_006251172.1 lncRNA downstream 295579 13101279 ~ 13103566 (+) True LOC122346816
XR_006251171.1 lncRNA downstream 296572 13102272 ~ 13103566 (+) False LOC122346816
TU66449 lncRNA downstream 507853 13313553 ~ 13313854 (+) True G44872
XM_043241014.1 mRNA upstream 122 12760860 ~ 12765699 (+) True LOC122346411
XM_043241695.1 mRNA upstream 5413 12740819 ~ 12760408 (+) True LOC122346842
XM_043242035.1 mRNA upstream 34738 12704645 ~ 12731083 (+) True LOC122347050
XM_043242034.1 mRNA upstream 34738 12710982 ~ 12731083 (+) False LOC122347050
XM_043242840.1 mRNA upstream 238864 12525040 ~ 12526957 (+) False LOC122347491
XM_043241060.1 mRNA downstream 800 12806500 ~ 12835911 (+) True sned1
XM_043242408.1 mRNA downstream 32529 12838229 ~ 12877785 (+) False ryk
XM_043242406.1 mRNA downstream 32542 12838242 ~ 12877785 (+) True ryk
XM_043242407.1 mRNA downstream 32543 12838243 ~ 12877785 (+) False ryk
XM_043241313.1 mRNA downstream 75634 12881334 ~ 12897897 (+) False slco2a1
TU65993 other upstream 673366 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 755712 12002148 ~ 12010109 (+) False LOC122346564
unassigned_transcript_1089 other upstream 792777 11972971 ~ 11973044 (+) True trnai-aau_2
TU65822 other upstream 1345491 11415273 ~ 11420330 (+) True G44478
TU66063 other downstream 274910 13080610 ~ 13082119 (+) False smx5
TU66125 other downstream 303035 13108735 ~ 13109366 (+) True G44645
TU66465 other downstream 588529 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 1166473 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 1275233 14080933 ~ 14081004 (+) True trnag-ucc_2

Expression Profile