RNA id: TU66217


Basic Information

Item Value
RNA id TU66217
length 2939
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G44705
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12149834 ~ 12437749 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAACAACAGAaaaaaaaaatatgagtgGAGTGCATAAGAGGAGAATGGAAGCACACAAATATTTGGTGTTGATTATGAGAACtgattcattctttcattttggGAGATggtaaaatgaatgcaatgttTTGAGCCTTGAAACATGTTTCATGTAAATTGCTTGTAGAAATGGTACAGGACAGGCTATAATATGAAGAATATCATTCAGCTCTCTGCATTACTTTCTACAAGGTGcacagacaaaaaaagtcaatacGATACACATTTGCTTGCATACTCAAAATGAAAGTAATTCTTTTAACTCTGTTAATTTTGTTCTCgcttattttataaatgcacctattattactattaacacactctttttttctaaaagttgTGGCATTGCTTATATTACTCTGAACTGGTCATGAAAGTGAGATATACACACAGTAATCACAAAAAAGTGCAGTAACCGAGAACCTTCAGGTATTGAGAATCCTTTGCGTTCTGCTTTTACAAACAAGCAGAACTCCACTTAATCATAGAAACAGAAACCCACATTTTGGAAACAGAAATGTAGATTTTTGATGTTTATTCATATACAGATCGAGGCTTTCAATATCGGTTCGTTCAGTGCCAGATTCTTGCTATAATCAGCATGTGCTAAAGGTTGGCTGGCCTCAGTCATGCAGATATGTCTGAATCATGCCCTGGAGGAACCTCAGGTTTGCAAATAGTTGATCTGCACTTTAAAATTTGCAGGTATGGAAGAAAAGGTCATCTCAGGTAACCTGCAGGATCATCCCAAAACCACATTACTATAAGCCTTCTGGACTAATGATAGTGGACATATGGGCTCTGCTGCTGTGACCAAGTCGAGGTCTGATCCACAGAACATCTTTTGCACTACAAAGGGTCTAAATCACAGCTGTTGGTATTATATAActcaaaaatgcagtttcataTTCCAAAACCAGTCATTTGGCTGAAGTTAAACAGCTATCTGCAATCTCAACACAGACGGTCGCCTGTTTGATGGGGTTTGCACAGCCTAAGCCTATTGACATTAAGCAGAACAATCATACCTGAGATGACTTCAATCTAGAAAAtggaatttaaaatgtattatgttgtATGTGTTAGCCTGTCAGATATTTTAtgaaatcataatcataaaaaaaggaTTGGAAGAATAACACCAGCAGGGTTTATATCTAGAGTCCATGACGACTGAATGAATAGATTTGTTCggttcatttttaagtgaaatttttaagtaaaaaaaaaaatactatttagaTATGCTTATAAACCTAGTTAAATTTAGGACAAGTgcaatatacaaacaaaatatgcaaactaaaagcacatttaaaactgcttttgcCTGTGCACAGGAATGATTACACCACACGAATAGAAAGAGTGACAGCGATGAGTGGGCCTTAAAGTGGACATTCACCCTGTTAAAGAAGCGCACAGGGATTAAGATCATGGAAATGATCAAATTAAACAGAGGATGCAAAGAGGCACAAAATCATATGTCATCACTCTCTAGGATGCGTGTAGAAAATTCCATCAGTACTATACATTTGATTTGCTCTAACAAACTTCATTTTCCAAGACTGACCACTGTACAAACACTCATTTGGGAGTTTGGGCAAGGAGGATGATTTTTCTTAACCTGATAAATCTCGCAAAAAGCATTTTCGTTTTTCTCAACCAAAACTGGTTTAACGTACctaaaaagtaaaattcaaGTAATCTACATGTAATAGCAGCTATCCCAGCTATTCACTTCTAAGCTGTTTCCCCTAATGCGTTTCACTTTGTCGGGGGGGGGAATGAGAGCAGTGTGGTCAGTAAAAGGGAGGTTAGTCAACTCATGATAAAAAAAGTGCCATATGCAGAAATTGCACTGTACttcttcaaaaatattacagtCTTTGTCAATAAATACatggtgaaataaataaaaacatgttaaataaatacctaACAAGATAAGACTTtaatagaaattttaaaaataaattagacaGATATAAGATCATTTGGGGATACcgataattttttatataaaatattagacTGGATTATGATACATTTCAGATAAATCTACTGACCAGTACTCCAACAAAAATAGGCCAATCTTTATAATGGTTCTCATACAGAGACATGAGAATGCAACCATTTGCCAAATTGTCCCTAATGCGTCCTGGTTATTTTGAAAACTTTATGCATTTCAAAGCCGTACAAGGGAAACATTATAAAGGTATATGAGTATTTATGATGGGTTGAACTGTGTCCAAGAACTGCACTTAAAGAGAGTAAGAGCGTAATATGATGTGATTCATCTGCTCCTTGCTAAGAACTGCGTATCATTGATCAATTCTATCTTCCGTAGCCAAGAGATGAATAAACATATGGTCTGCTGATTTAAATACTGACCAGTTTTATCGTTTTAAACCCATAGAGTAACACAGTAAGGCCATGTGATCCATTTTCCCACAAACCCAAGATATGGACGTCATTCTTCACAGTAACAAATTCAGATGTGTTTGCATGAGCTGACAGCTTCAGAATTAGAAATTCCCATCACCAGCTTGCTAAAGATGTTGCTGAAGACTACATAAGCATACTATCTCTACCCCGATAAAGTAGTTCTCTTGGCGCTATAAGTTGAATATTTAGGCCACTGTAGATGCACAACAAAGGGGGGCCTTTAAGATACAAGGTGCACAGTTGGTGCTAGTGTGGGCAGGTGCAGGTACACACATGTAGGAAACAGAGGCTCAGAGAGTTGATTAAGCACAGAAACTGGGGGATCTGTCAGTAGATCTATTTACAAGATTAGTCCTTTGTGGGGGGTTTTGTCCTCGAGGAGTTGTACAGAAGGTATACATGTAGTGGGCTCAAAACCTCATCTGCCCGGCTCTTCTTCTGGACAGTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65869 lncRNA downstream 721071 11428125 ~ 11428763 (-) True G44501
TU65799 lncRNA downstream 907328 11242277 ~ 11242506 (-) True G44460
TU65798 lncRNA downstream 907802 11241637 ~ 11242032 (-) True G44459
TU65796 lncRNA downstream 910370 11239119 ~ 11239464 (-) True G44457
TU65791 lncRNA downstream 911636 11237962 ~ 11238198 (-) True G44452
TU66272 lncRNA upstream 306749 12523956 ~ 12525300 (-) True G44730
TU66270 lncRNA upstream 308549 12525756 ~ 12897718 (-) False LOC122347614
TU66261 lncRNA upstream 308793 12526000 ~ 12572671 (-) False LOC122347614
TU66268 lncRNA upstream 310641 12527848 ~ 12897718 (-) True LOC122347614
TU66280 lncRNA upstream 378639 12595846 ~ 12965513 (-) False G44737
XM_043241350.1 mRNA downstream 55094 12088224 ~ 12094740 (-) True zgc:103559
XM_043241354.1 mRNA downstream 62241 12084281 ~ 12087593 (-) True agxta
XM_043241357.1 mRNA downstream 66294 12081977 ~ 12083540 (-) True dtymk
XM_043242752.1 mRNA downstream 87770 12055892 ~ 12062064 (-) True stk25a
XM_043241195.1 mRNA upstream 45712 12262919 ~ 12264713 (-) True LOC122346505
XM_043243024.1 mRNA upstream 413605 12630812 ~ 12699547 (-) False LOC122347614
XM_043242303.1 mRNA upstream 749893 12967100 ~ 12970628 (-) False im:7152348
XM_043242304.1 mRNA upstream 749893 12967100 ~ 12970628 (-) True im:7152348
XM_043241667.1 mRNA upstream 868893 13086100 ~ 13109224 (-) False bcl6aa
unassigned_transcript_1088 other downstream 177054 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1087 other downstream 177283 11972480 ~ 11972551 (-) True trnag-ucc_1
XR_006251151.1 other downstream 1080376 11055035 ~ 11069458 (-) False brdt
XR_006251152.1 other downstream 1080377 11055035 ~ 11069457 (-) False brdt
TU65678 other downstream 1433093 10710045 ~ 10716741 (-) True G44358
unassigned_transcript_1090 other upstream 753876 12971083 ~ 12971154 (-) True trnap-ugg_5
unassigned_transcript_1091 other upstream 754271 12971478 ~ 12971549 (-) True trnap-cgg_1
unassigned_transcript_1092 other upstream 1203440 13420647 ~ 13420718 (-) True trnaa-cgc
unassigned_transcript_1093 other upstream 1203622 13420829 ~ 13420900 (-) True trnaa-cgc_1
unassigned_transcript_1094 other upstream 1204113 13421320 ~ 13421391 (-) True trnaa-ugc_1

Expression Profile