RNA id: TU66346


Basic Information

Item Value
RNA id TU66346
length 324
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G44784
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12984812 ~ 12985135 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttcaattattattctGTAAAAAGCAACTTTGAGTAAACAGTTGCTGAACTTATAAATGCCTACACtgcaataaaatgttatcaCTCCCAGAGTAGAAAGTACTACACATTTTATCAGTATCTGAGGTGTTTGTAGGAGTGATAAAAAAGGATACAAGTGCATACATGTAGGTCtttattgtttgtatattaaGCTCTtcaataattaacaaaaaaaagcattcaaatttAGATAACTAAATATAGATAACTTATCATGCACGgattcttttacatttatactgttcatttgtgttatattttcttattgtatttattcatt

Function

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0022414 reproductive process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66280 lncRNA downstream 19299 12595846 ~ 12965513 (-) False G44737
TU66282 lncRNA downstream 19299 12629555 ~ 12965513 (-) False G44737
TU66281 lncRNA downstream 19299 12963383 ~ 12965513 (-) True G44737
TU66284 lncRNA downstream 19299 12963383 ~ 12965513 (-) False G44737
TU66270 lncRNA downstream 87094 12525756 ~ 12897718 (-) False LOC122347614
TU66349 lncRNA upstream 3970 12989105 ~ 12989307 (-) True G44787
TU66360 lncRNA upstream 39972 13025107 ~ 13026209 (-) True G44798
TU66420 lncRNA upstream 228907 13214042 ~ 13243275 (-) False LOC122346940
XR_006251183.1 lncRNA upstream 228922 13214057 ~ 13243671 (-) True LOC122346940
TU66434 lncRNA upstream 294548 13279683 ~ 13279882 (-) True G44863
XM_043242303.1 mRNA downstream 14184 12967100 ~ 12970628 (-) False im:7152348
XM_043242304.1 mRNA downstream 14184 12967100 ~ 12970628 (-) True im:7152348
XM_043243024.1 mRNA downstream 285265 12630812 ~ 12699547 (-) False LOC122347614
XM_043241195.1 mRNA downstream 720099 12262919 ~ 12264713 (-) True LOC122346505
XM_043241350.1 mRNA downstream 890072 12088224 ~ 12094740 (-) True zgc:103559
XM_043241667.1 mRNA upstream 100965 13086100 ~ 13109224 (-) False bcl6aa
XM_043241666.1 mRNA upstream 100965 13086100 ~ 13096482 (-) False bcl6aa
XM_043241669.1 mRNA upstream 100965 13086100 ~ 13093536 (-) False bcl6aa
XM_043241668.1 mRNA upstream 100965 13086100 ~ 13093536 (-) False bcl6aa
XM_043241670.1 mRNA upstream 100965 13086100 ~ 13093348 (-) True bcl6aa
unassigned_transcript_1091 other downstream 13263 12971478 ~ 12971549 (-) True trnap-cgg_1
unassigned_transcript_1090 other downstream 13658 12971083 ~ 12971154 (-) True trnap-ugg_5
unassigned_transcript_1088 other downstream 1012032 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1087 other downstream 1012261 11972480 ~ 11972551 (-) True trnag-ucc_1
XR_006251151.1 other downstream 1915354 11055035 ~ 11069458 (-) False brdt
unassigned_transcript_1092 other upstream 435512 13420647 ~ 13420718 (-) True trnaa-cgc
unassigned_transcript_1093 other upstream 435694 13420829 ~ 13420900 (-) True trnaa-cgc_1
unassigned_transcript_1094 other upstream 436185 13421320 ~ 13421391 (-) True trnaa-ugc_1
unassigned_transcript_1095 other upstream 436489 13421624 ~ 13421695 (-) True trnaa-cgc_2
unassigned_transcript_1096 other upstream 436670 13421805 ~ 13421876 (-) True trnaa-cgc_3

Expression Profile