RNA id: TU66446


Basic Information

Item Value
RNA id TU66446
length 1533
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G44869
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13336918 ~ 13338450 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGAGGTCAAGCCTAAGCGGAAAGGTAAATCGTGTCCTCTAGACAGCCGCTTTAAGTTTTTGTTGTGATATGAAAAGAGACTCCCTATTGCCCTTGAGTGGAATTTGATTGGCAAAGTGGCCGAGGGTGGAGAAGAGTTGAGAAACTTTCAAGGCACCCGTGACCCCACATGACCCGTCTAACACCAGCGCAACATGGCATGCCTGCAGCGAGTAACACTATACAAACAGTCTATCTCCAGTCTCACGTGATACATGGCCTGTAGCTTCCCAATCTCCAACAAACACTTACTCGAGTCACCTCTTAGGTTCTGGAGAAGAGACTATACGTTACTTCTAATGAGTAAGACACAAGtgaatagcaaaaaaaaaaaaggcaaatggCAGCATTGTAATTTTCCCAGTTGCTTAGTCACAGTAAATGTAGAGTttggttaaatattaaaatgattcattatatgctaatttgcttAAATCGCAAAATCACAGAAATTCCAGCAGTGGATAAAACCACtgatttttaaattgatgtttgtttgcatgttaaaatgtgtttcagaCCAGTTTTTATCACTCTGTAAATCATACAGTCGACAGCTAGAACTGTTTGCTATGTTTCTAggcataaaatgtcaaaatcaatCCGGTGACTCATTATTAGGAATAAAATGAGCAAGTTTGTTGCATTGTTGCAAGTTTGCTGAAGGGTGGATTTCTGGCTCTGTGCATGAGTCCCCACTGACCAGCGCATGACAAACACAATGGATTTGCCTGTAGTGTCTTGTCTTAAGTGAACCGTTTAGTTCTCTACTTTTCCAAAAAACAGCAGAGCAGTCGCTCACTTCTGTATGAGATTTAAGTCACGATGCTAAGTGTCCTGAGATGCGGTGTCTGTATTGGCCCTCAGGTCAGACTAGTGCCACTACGTCTCAGTGTCTCCGAGCATTGCTTGTTTGTTCAGTAAACACGAGGCACCTGTTTGCGGAATTCGGGTTGCCAACTAGACCAGTCCAGTGGCATTTATTATGCCTAATGACCCCAGCCACCTTTTCCTTTTCGCTTTCTGCTCTTTCCATCTGTCAGCCATACAGCTGTGTGTTAGGTTGTACTGAGGCAGGCGACGTAGATAGGgatactttgtttttatttatctcatCCTCACCCCCCCCTGTTTTCGCCTCAGCTGTCAGTGTTGTGTCTGGAGTGTGGTGTCAAACGTAGCGGGGAATGGGACACTTGGAAAAGACTCAACTTCGCCAGCCCTCTCAGCTATGCAGAATGTAGAGGGGAGAGAGGAGCACGCCCTGGATTCAGATCATGGAAAACAATAGCTATGACAAAAATGTCAGGACGCCGTTGATGGTTTGGCGTCATCACTGCAAAAGACCAGCCCCCGTCATTTTGTTTACAactatgaattatttttattcatctctaaatattaaataggtTTTTCTATTGGTGACTGTATATAAAGCGAAGATCTCATGGCCCCAAGTTAGTTTGTATTCTATAAAGATATGCACattaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66450 lncRNA upstream 1376 13335189 ~ 13335542 (+) True G44873
TU66449 lncRNA upstream 23064 13313553 ~ 13313854 (+) True G44872
XR_006251172.1 lncRNA upstream 233352 13101279 ~ 13103566 (+) True LOC122346816
XR_006251171.1 lncRNA upstream 233352 13102272 ~ 13103566 (+) False LOC122346816
TU66120 lncRNA upstream 241008 13093856 ~ 13095910 (+) True G44640
TU66451 lncRNA downstream 584 13339034 ~ 13339305 (+) True G44874
TU66453 lncRNA downstream 4026 13342476 ~ 13342840 (+) True G44876
TU66456 lncRNA downstream 6814 13345264 ~ 13345944 (+) True G44879
TU66458 lncRNA downstream 8430 13346880 ~ 13347147 (+) True G44881
TU66461 lncRNA downstream 11748 13350198 ~ 13350433 (+) True G44884
XM_043242168.1 mRNA upstream 3344 13314057 ~ 13333574 (+) True tprg1
XM_043241840.1 mRNA upstream 57738 13119195 ~ 13279180 (+) True LOC122346939
XM_043241841.1 mRNA upstream 57738 13127515 ~ 13279180 (+) False LOC122346939
XM_043241811.1 mRNA upstream 254799 13080565 ~ 13082119 (+) True smx5
XM_043241810.1 mRNA upstream 256872 13065838 ~ 13080046 (+) True inpp5d
XM_043241158.1 mRNA downstream 12071 13350521 ~ 13385990 (+) True tp63
XM_043241155.1 mRNA downstream 12080 13350530 ~ 13389446 (+) False tp63
XM_043241153.1 mRNA downstream 12083 13350533 ~ 13389439 (+) False tp63
XM_043241150.1 mRNA downstream 14027 13352477 ~ 13389570 (+) False tp63
XM_043241145.1 mRNA downstream 14055 13352505 ~ 13390651 (+) False tp63
TU66125 other upstream 227552 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 254799 13080610 ~ 13082119 (+) False smx5
TU66085 other upstream 555998 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 1244463 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 1326809 12002148 ~ 12010109 (+) False LOC122346564
TU66465 other downstream 55779 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 633723 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 742483 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 1897761 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 2020411 15358861 ~ 15459386 (+) True G45419

Expression Profile