RNA id: TU66450


Basic Information

Item Value
RNA id TU66450
length 354
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G44873
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13335189 ~ 13335542 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCAGTTAATCATCATGAGGTTTCATAATGAGAGAGTTTCAAGATACATTCTTCTGTGAAAAGGTAAGACGTAGCCCATGGCTACagaatatgactttttttttttttttttttttactgaggcACAGCCTCTGACAAACTGACATCCTTTTGTTTTTCCATGTTTAGTAAATGGGTAAAAGTTTACACGGAAGGGCcgtgttttttttggttgtccTGTACAAGTCCAGTAGCATTTTGTATCATCACGGCCATTAGTAGCAATATTTAGAGTGCTTACaaagttaatatattatttttgacaaaacaaatgcaggaaataagactctctctctctctctctctctctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66449 lncRNA upstream 21335 13313553 ~ 13313854 (+) True G44872
XR_006251172.1 lncRNA upstream 231623 13101279 ~ 13103566 (+) True LOC122346816
XR_006251171.1 lncRNA upstream 231623 13102272 ~ 13103566 (+) False LOC122346816
TU66120 lncRNA upstream 239279 13093856 ~ 13095910 (+) True G44640
TU66066 lncRNA upstream 250959 13083380 ~ 13084230 (+) True G44615
TU66446 lncRNA downstream 1376 13336918 ~ 13338450 (+) True G44869
TU66451 lncRNA downstream 3492 13339034 ~ 13339305 (+) True G44874
TU66453 lncRNA downstream 6934 13342476 ~ 13342840 (+) True G44876
TU66456 lncRNA downstream 9722 13345264 ~ 13345944 (+) True G44879
TU66458 lncRNA downstream 11338 13346880 ~ 13347147 (+) True G44881
XM_043242168.1 mRNA upstream 1615 13314057 ~ 13333574 (+) True tprg1
XM_043241840.1 mRNA upstream 56009 13119195 ~ 13279180 (+) True LOC122346939
XM_043241841.1 mRNA upstream 56009 13127515 ~ 13279180 (+) False LOC122346939
XM_043241811.1 mRNA upstream 253070 13080565 ~ 13082119 (+) True smx5
XM_043241810.1 mRNA upstream 255143 13065838 ~ 13080046 (+) True inpp5d
XM_043241158.1 mRNA downstream 14979 13350521 ~ 13385990 (+) True tp63
XM_043241155.1 mRNA downstream 14988 13350530 ~ 13389446 (+) False tp63
XM_043241153.1 mRNA downstream 14991 13350533 ~ 13389439 (+) False tp63
XM_043241150.1 mRNA downstream 16935 13352477 ~ 13389570 (+) False tp63
XM_043241145.1 mRNA downstream 16963 13352505 ~ 13390651 (+) False tp63
TU66125 other upstream 225823 13108735 ~ 13109366 (+) True G44645
TU66063 other upstream 253070 13080610 ~ 13082119 (+) False smx5
TU66085 other upstream 554269 12766183 ~ 12780920 (+) False crocc2
TU65993 other upstream 1242734 12087399 ~ 12092455 (+) False G44588
XR_006251144.1 other upstream 1325080 12002148 ~ 12010109 (+) False LOC122346564
TU66465 other downstream 58687 13394229 ~ 13409912 (+) True G44887
XR_006251224.1 other downstream 636631 13972173 ~ 13979005 (+) False meltf
unassigned_transcript_1264 other downstream 745391 14080933 ~ 14081004 (+) True trnag-ucc_2
TU67192 other downstream 1900669 15236211 ~ 15238200 (+) False pomgnt1
TU67233 other downstream 2023319 15358861 ~ 15459386 (+) True G45419

Expression Profile