RNA id: TU66532


Basic Information

Item Value
RNA id TU66532
length 535
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G44942
representative True

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13356987 ~ 13357521 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAAAGTGAATGCTAGAGTTGAATTACTGGGACAACGGTGTGCTGCCAGGCCTGTCACTGGggataaaagctttttcaacCCTAATGTTTACTTTAAGCCTCATAGATATTGTCATTTGGCACACTGGAAGACGCATAAATGCCAAGCCCAATGCGTCAATTGTCTTGGTGTGTCCACAGGTCCATACCTTAGCATTCCTACTTCCCACTGCAAGATACAAATCTAAACGCCACTTCATTTTACACTGCGAACAAGACAGTCTGAGGGGCTTTTAAGGGAGTaagcaaatacaaaataaaagctgggGCCTAATTTACTGACAGCTGATCATACAGTTAGTTacaagtacaataaaaaaaaggtgcTATGGAGAACAACGGGGTACTTATTTATTGGATGTCATGGTGGGACCTTGACAATAAAAAGAACTGGGTATAACTCTTGATTTGATTACAACcttttgccatttttgcatGGTTTTATAGATGCTAAAAAGTTATAAGCACCATAAGAATACGCATCTGggaaaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66531 lncRNA downstream 2204 13354307 ~ 13354783 (-) True G44941
TU66530 lncRNA downstream 2807 13353915 ~ 13354180 (-) True G44940
TU66529 lncRNA downstream 3337 13353364 ~ 13353650 (-) True G44939
TU66528 lncRNA downstream 3918 13352462 ~ 13353069 (-) True G44938
TU66527 lncRNA downstream 6773 13349688 ~ 13350214 (-) True G44937
TU66619 lncRNA upstream 179423 13536944 ~ 13611593 (-) True G45014
TU66648 lncRNA upstream 335817 13693338 ~ 13694164 (-) True G45036
TU66652 lncRNA upstream 339978 13697499 ~ 13697711 (-) True G45039
TU66661 lncRNA upstream 360681 13718202 ~ 13722531 (-) False pex5la
XR_006251212.1 lncRNA upstream 466151 13823672 ~ 13835591 (-) False LOC122347350
XM_043241667.1 mRNA downstream 247763 13086100 ~ 13109224 (-) False bcl6aa
XM_043241666.1 mRNA downstream 260505 13086100 ~ 13096482 (-) False bcl6aa
XM_043241669.1 mRNA downstream 263451 13086100 ~ 13093536 (-) False bcl6aa
XM_043241668.1 mRNA downstream 263451 13086100 ~ 13093536 (-) False bcl6aa
XM_043241670.1 mRNA downstream 263639 13086100 ~ 13093348 (-) True bcl6aa
XM_043241142.1 mRNA upstream 33182 13390703 ~ 13407082 (-) False tbc1d23
XM_043241140.1 mRNA upstream 33182 13390703 ~ 13407082 (-) False tbc1d23
XM_043241141.1 mRNA upstream 33182 13390703 ~ 13405896 (-) False tbc1d23
XM_043241138.1 mRNA upstream 33182 13390703 ~ 13405896 (-) False tbc1d23
XM_043241139.1 mRNA upstream 33182 13390703 ~ 13405871 (-) False tbc1d23
unassigned_transcript_1091 other downstream 385438 12971478 ~ 12971549 (-) True trnap-cgg_1
unassigned_transcript_1090 other downstream 385833 12971083 ~ 12971154 (-) True trnap-ugg_5
unassigned_transcript_1088 other downstream 1384207 11972709 ~ 11972780 (-) True trnap-ugg_4
unassigned_transcript_1087 other downstream 1384436 11972480 ~ 11972551 (-) True trnag-ucc_1
XR_006251152.1 other downstream 2287530 11055035 ~ 11069457 (-) False brdt
unassigned_transcript_1092 other upstream 63126 13420647 ~ 13420718 (-) True trnaa-cgc
unassigned_transcript_1093 other upstream 63308 13420829 ~ 13420900 (-) True trnaa-cgc_1
unassigned_transcript_1094 other upstream 63799 13421320 ~ 13421391 (-) True trnaa-ugc_1
unassigned_transcript_1095 other upstream 64103 13421624 ~ 13421695 (-) True trnaa-cgc_2
unassigned_transcript_1096 other upstream 64284 13421805 ~ 13421876 (-) True trnaa-cgc_3

Expression Profile