RNA id: TU66652



Basic Information


Item Value
RNA id TU66652
length 213
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G45039
representative True

Chromosome Information


Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13697499 ~ 13697711 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


AAACGggcaatatttcacattattctCCCTGACGCCAAGTGGTGGCGTTTTCAGATCGACGCTGTGTTTATAACGGCAGTGGGACTACAGTATGCGGCTTAGCGTACTTCATACTGAATAACTTGTCTTTTTTACCTTTTAGCAAGCGATTGgtcaaatattatgtttattacgttttaatttattagtaaGTATTCTATGTGTAGGCCTACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU66648 lncRNA downstream 3335 13693338 ~ 13694164 (-) True G45036
TU66619 lncRNA downstream 85906 13536944 ~ 13611593 (-) True G45014
TU66532 lncRNA downstream 339978 13356987 ~ 13357521 (-) True G44942
TU66531 lncRNA downstream 342716 13354307 ~ 13354783 (-) True G44941
TU66530 lncRNA downstream 343319 13353915 ~ 13354180 (-) True G44940
TU66661 lncRNA upstream 20491 13718202 ~ 13722531 (-) False pex5la
XR_006251212.1 lncRNA upstream 125961 13823672 ~ 13835591 (-) False LOC122347350
XR_006251213.1 lncRNA upstream 125961 13823672 ~ 13835591 (-) False LOC122347350
XR_006251214.1 lncRNA upstream 125961 13823672 ~ 13835591 (-) True LOC122347350
TU66677 lncRNA upstream 139594 13837305 ~ 13837538 (-) True G45058
XM_043242700.1 mRNA downstream 4673 13691026 ~ 13692826 (-) True mrpl47
XM_043241544.1 mRNA downstream 16205 13655260 ~ 13681294 (-) False tmem131
XM_043241543.1 mRNA downstream 16205 13655260 ~ 13681294 (-) True tmem131
XM_043241545.1 mRNA downstream 58554 13607613 ~ 13638945 (-) True nme7
XM_043241546.1 mRNA downstream 58556 13607516 ~ 13638943 (-) False nme7
XM_043241824.1 mRNA upstream 24598 13722309 ~ 13785903 (-) False pex5la
XM_043241826.1 mRNA upstream 24598 13722309 ~ 13785901 (-) False pex5la
XM_043241825.1 mRNA upstream 24598 13722309 ~ 13785901 (-) False pex5la
XM_043241823.1 mRNA upstream 24598 13722309 ~ 13785901 (-) True pex5la
XM_043241827.1 mRNA upstream 24598 13722309 ~ 13785900 (-) False pex5la
TU66636 other downstream 16225 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 229560 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 229934 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 230273 13467155 ~ 13467226 (-) True trnaa-ugc_114
unassigned_transcript_1260 other downstream 230442 13466986 ~ 13467057 (-) True trnaa-cgc_54
TU66983 other upstream 462764 14160475 ~ 14193166 (-) True G45257
TU67455 other upstream 1631256 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 1906199 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 2361257 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 2362182 16059893 ~ 16060466 (-) True G45731

Expression Profile