RNA id: TU66661


Basic Information

Item Value
RNA id TU66661
length 1583
lncRNA type sense_over
GC content 0.35
exon number 2
gene id pex5la
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13718202 ~ 13785903 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACAATTGTGGATTTTATTGAACAATCCAAACATTATGAGTCACAAGTATGTTTGAACAGGTTTCGAATGAGGATTCCCACATTTGCCATGTTTGTGTTTCTAAACAATGTATGGATCagaaaatccattaaaaaaaaaaaaattataacaaacaAGTGGGCAAGTTTGTAAAGTAACTACAGAATTGGCAcacttttttgcaaaaaaaaaaaaaaaaagatagataaacaataaaaacataccaCTTGACCTTCAGTTCCATGAAAAACAGAACCCGGTAAAGATCaataatatattgcaaaatgtcaaCTGACTAACCTCTGGTTTTTAGTGcacatactgaaaaaaataaatcaaggcATGTTTGAAAAAGGTGGGGTAAAAGCATCCACTTTCACACCCTAAAAGAAAGCATCAATATAAGAGACAGAAGCAGAAGGAAATGGGTATGAATATTCATTCAAAgtaagaaagagaaggagagaaagagcgagagaacCTCGGATGGATAAGACACATGCACAACACGAGGTGAAGGAACAAAGACGCTGAACTCCCAACATAAAAGGTAGCGCACAACGGAAATAAACATGACAGCGTACAATCTACAACCGTGTAGTTGAAATAAATCGAGATGAACAGGCCCCACCTCAGCCTGAGTGAGATTATgtcataaaacaatacattttacgttttaattcagcccattttcagcaaataaatgaaaaaggtttGAAATTGGTAAATGGTGATGTAGGCGGAGCCAAGTTTGTCAGATATGCTGTAAAGCTTTTGAAAGCTTGAGATTTGGTAACACTGAGCACCAATACGTACATGTATCTGAGATAGTTCATGTATGACACTGCATGTAATTCAGCTTTATATGCAGTATGTCATCACATATTGCTTAGGTACGggataaaaatagttttacattcTTTGAGACTGGAAGTCAGTGAAACGGAACGATTTCAAATGCACCCCGGTCTTTAAACGGCTTCAGATATGATCAAAGTAAAGCACTTGAACATTGCATGAATATGTGATATTGCTGCATTTTCTGCTCAGCTATCACAGACTGACTGAAAGCTATCATAAAGTTGAATGCGATGATATTGTACAAATGAAATATTCTTCAAGGCATGCCGATAAATGAGGCTCAGTGTtcttaaatttaaacaaaaatcattaaagtaCAAGCTCACTTCTGCCTAAAGGTTTGGAAAGTGAACAAATGTGCTGCTGGGTAGAATAAACCTTCATTAAAGGAAAAGTacactaaaaaatgaaaatgtacttatcCTCAGGCTATCTACAATGTAGATGAATTAGTTTTTTCGTTGaaacggatttggagaaatttagcattgcatcactttctaaacaatggatcctctgcagtgaatgggtgccgtcagaatatcTAGAGCCCAACAGTTAACATTTGGCAAAGTGtgtgtttcttacaaacatgcatcttttcATTTCCCAAAATGTTAATCGATGTactggagttgtgtggattacttttggattattgcaatgttttttttttttttttttttttttttttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66652 lncRNA downstream 20491 13697499 ~ 13697711 (-) True G45039
TU66648 lncRNA downstream 24038 13693338 ~ 13694164 (-) True G45036
TU66619 lncRNA downstream 106609 13536944 ~ 13611593 (-) True G45014
TU66532 lncRNA downstream 360681 13356987 ~ 13357521 (-) True G44942
TU66531 lncRNA downstream 363419 13354307 ~ 13354783 (-) True G44941
XR_006251212.1 lncRNA upstream 101141 13823672 ~ 13835591 (-) False LOC122347350
XR_006251213.1 lncRNA upstream 101141 13823672 ~ 13835591 (-) False LOC122347350
XR_006251214.1 lncRNA upstream 101141 13823672 ~ 13835591 (-) True LOC122347350
TU66677 lncRNA upstream 114774 13837305 ~ 13837538 (-) True G45058
TU66688 lncRNA upstream 120203 13842734 ~ 13848641 (-) True G45064
XM_043242700.1 mRNA downstream 25376 13691026 ~ 13692826 (-) True mrpl47
XM_043241544.1 mRNA downstream 36908 13655260 ~ 13681294 (-) False tmem131
XM_043241543.1 mRNA downstream 36908 13655260 ~ 13681294 (-) True tmem131
XM_043241545.1 mRNA downstream 79257 13607613 ~ 13638945 (-) True nme7
XM_043241546.1 mRNA downstream 79259 13607516 ~ 13638943 (-) False nme7
XM_043242271.1 mRNA upstream 263516 13986047 ~ 14040163 (-) True lrrc7
XM_043241204.1 mRNA upstream 404043 14126574 ~ 14128317 (-) True cldn33b
XM_043242836.1 mRNA upstream 457341 14179872 ~ 14190329 (-) True lurap1
XM_043242907.1 mRNA upstream 475161 14197692 ~ 14200743 (-) True ttc4
XM_043241459.1 mRNA upstream 562966 14285497 ~ 14402960 (-) True pde4ba
TU66636 other downstream 36928 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 250263 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 250637 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 250976 13467155 ~ 13467226 (-) True trnaa-ugc_114
unassigned_transcript_1260 other downstream 251145 13466986 ~ 13467057 (-) True trnaa-cgc_54
TU66983 other upstream 437944 14160475 ~ 14193166 (-) True G45257
TU67455 other upstream 1606436 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 1881379 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 2336437 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 2337362 16059893 ~ 16060466 (-) True G45731

Expression Profile