RNA id: XM_043241825.1


Basic Information

Item Value
RNA id XM_043241825.1
length 5707
RNA type mRNA
GC content 0.44
exon number 14
gene id pex5la
representative False

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13718202 ~ 13785903 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGCTAGCTGAACAACATGAAAACGATGAGAACACCTGGACCGAGCATCTGTGAATGACGGAACCGGCTCCGCCTAAATCCTCCGGTCTGAGGAGAGGAGGGGACGAACGCtcgacaaagagagagagagagagagagagagagagagagagagagagagagagagagagagggagcgtCTGATAAAGGAGGGAGGAATTGCCGAAGAATCAGACCAACTACGATAAAACCCCACAGAGCCGCACCGGGGCTGAGATTATGACGTAGGCGCGACCCTCGAGCGTCCAGCGCATCCGTCGCGCTCCTCGGCAACTTGGTGAAGAGACCCGCCGGTGCGCGTGAAGCTCGGGAGCCTCTTCGCCTTATAAAGTGCATCGGTGACGAAAGCTGTCGCGTGCGCGTAAATTCAGCACTTGGTGCGCGAGACAGCTCCGGCGCGTCGGCTTCCCTAACTGGACTCAATTTCAAGAACAGTTCTTTCGGCACTTTTTAGAGCACTCCGGCACGCGCATGCACGTTAGAAGAGTCATCCTGTTTCTTGGTTTCATCTAACTGCTATCCATAGTCTGGGACCTTCACTAAATATGTACCAGGGGCATTTGCAGGGGAAAGACTCTAGGGCTGCAGATAAGACCGTTGCCATGGTCCTGAAGGAGATACCCAATAAGGCGTCCTCAGAAGGCAAGCCCCTCCTCACGGTGACAAACAAGCTGGTGAGTGAGCAACAAGAGAGCCGTCCCTTGCTGAGCCCTTCCATCGATGATTTCCTCTGCGAGACCAAGTGCGATGGAGCTGCCCGCCCAGTAACCTCCAACACAGCAGTACTCTCCTCCTCTCTGGACCTGCTGGATCTGAGTGAGCCTGGTGAGAGAAGACACAGCAAAGACAGGAAGAGCCCTCTTTCTTCTAAGGGCACACCATACAGGAAGAAGCCCGATGAAACAGAGCTGATCCAAGTGGATATTGAACAGAGTATACCCTGTTCCCGCACACCTGAAAAGATTTCATTGGACTCAGTAGCAGTTCCATCTTCTTTGGACAAATGGGAAGAACTCAACCCACACCCGGAGCGAAATGGTAGCAGAAAGTGGAAACTCGAGAGAAGGCGTTCATCAAAAAATTCTGGCGAATTTGTCTGGTCTATGGATTGCAAGACTCAGCTAGACAGTGCCCCTAGGAACTCCCTGGAGGTCAATAATAAAGTAGAGGCGGAAGCCGTGCCAGTAACTCAAGGCCGTTTGAGCAAAGACCAAAGGTGGGGTAGCACACTCCTGTCCAGAAACCAGTCTCTGGAGGAAGAGTTTGAGAGGGCTAAGGCAGCAGTGGAGTCAGACACAGAGTTCTGGGATAAGATGCAGGCAGAGTGGGAAGAGCTCGCTCGCAGGAACTGGCTAACAGAGAATGAGCGACCGCAGATTCCCTCTAATGTGTCTCCTTATGAAAAGGGATACTACTTCCACACAGATAACCCCTTCAAAGACTGGCCAAATGCATTTGAGGAGGGATTACGCAAGTCCAGAGATGGAGACCTGCCTAACGCTGTGCTTCTTCTGGAAGCAGCTGTGCTGCAGGACCCTCAGGATTCAGAGGCTTGGCTGGTGCTGGGAACCACGCAAGCAGAGAACGAGAATGAGCAGGCAGCAATTGTCTCCCTCCAGAGgtgtctGGAGCTCCACCCCAACAACCTCCAGGCCCTCATGGCCCTGGCAGTGAGCCTGACCAACACGGGCATGAGGCAGGAAGCGTGTGAGGCGCTGCTGAGCTGGATAAGGCACAACCCCAAATATAAGCAACTTCTGAAGAGCCGCACACACCTGCAGGCCTCACCTGGTTCAAGGAGACCCTCCTACCCTTCCGCCATGGGATGCCCCCTGCTGCCCGAGGTGAAGGAGCTGTTCCTGGAAGCTGCTCAGCACAACTCGGACACGATCGACCCAGACCTGCAGACAGGGTTGGGAGTGCTGTATAACCTCAGCTCCGAGTTCAACAAAGCAGTTGAAGCCTTCAACGCAGCGCTGTCTGTGCGGCCGGAGGACTACCTGCTGTGGAATCGGCTGGGGGCGACGCTGGCTAATGGAGATCGCAGCGAGGAGGCTGTGGAGGCCTATACCAGAGCCCTGGAGCTGCAGCCCGGCTTCATCCGCTCGCGTTACAACCTCGGCATCAGCTGCATTAACATGGGAGCTCACAGGGAGGCAGCCAGTAATTTCCTTACGGCTCTTGGCCTGCAGAGAAAGAGCAGGAGTCGGCAGCTTTCGCACCAGGTCATGTCTGGAAACATCTGGGCTGCCCTGCGGATAGCCCTATCCATGATGGATCAGCCGGAGCTCTTTCAAGCTGCTAACATAGGAGACCTGGACTTACTCATGAGAGCTTTTAACCTGGATATGTGAGAGTGGATACCCTTTAACCATGGCAAATATCCAAAGTCCTTTATGAGAAGAACTTTGTCAGAAAAGCAACCTTTGTTTTCGCAGAGCACCTTTACATTCCTGAGAACTGAGTGCTGAACGATACTATTTTACTAGATTTGCACATCGGTTTACGATTACCCTAAAGAGCACAATGCCGGGTGAAGATTGTACAAGTATGCCTTAGAGAAAATATCAGCTAGACCTGCAATGTAACAGTGGGAACCGGAGGAAACCACAACTGATGAGAGGAACATAGACTATAAATGTGCATTGGTTTCACATGAATGACTTGATTAGACATGTACTGTACTGCGTAGACTTCCTGTATTGGTTCGATTGCACTCTTTAGTTGAGATGGTGGGGTTATTATAGATTTTGGTGGCACTTAGTTCAACCCTGGACACTCCTCACCTGATCTCTGCTGCATCACCCCCTTTATTTCCTGGAGCTTGCAGACCAGATTAAAAAGCCTTACTTATCTTgcatgtcaaataaataattgagaTGTTATCGGTATGATATCAGATAAAAAGCCATTCCTTGCCATACTTTGACCTCTTGATGCAGAAGTCTATGTTCCATCAAGGTCTTTTTGTGAAACATACCACATCTTTGAAATGTTACGctgattatttcacaaaatttgATGCAGGGAATTAGATATACTGCCCCTTTTGCCAGACTGGGATCGACAGGAAAACAAGAAACTGCCCAAAATATAAGCCAAACTATTTTGTGAGCTTCACAGTTTTATACCCTAATGTTGTTTCTCATATTGCTTGTTATGGTTCATCTCCAGCTTgcatgatgttttattttgctcatCAGTGTGAACACGCAAGCGCTTCACGTCGCTTATGCGCTTCAAGAAAAGTCCCACCTTTTAAAATGCTATGCAAAACCTATAGATTTCTTTATGCTGCCGGAATCAGAAGAAACGTATAAAGCACCACAAAGCTGTATTTGCTTTGTCACTTGTGTTTTAAACTGGTAGGTAGAAGATCtgataaaaatggcattttaaggCTATGTCTACATTAATCCAGATACAtctgaaaatacatatttttttcaacatgtttGGCCTTCTGTCCCCACTGATGTGCTGTTTTTGTACtgtgaaataatttttagaAGATTCTGTTGACAGTCGATACATTTGAACATGACATAAATTTGTGGAACAAGACATTTTCAAATGGCCATGTGAAAtgttcattcagaaatgatatttgaagcatttttaGTCATGTGACACATTGTAGCTATATTAGTAATACCAACATATACCAACTATGTACTATTAACCTGCACTTTAAAGATAAATGTTACTTTCTGCAAAGATGACAAAGATGTACTAGGGAATCAAATCACAAGGACAGTTGTGACACCATACATGGAATAGTAACTGAGTGAGACCTGCACACACCAGTAAGTCGTGGgatattttgctaaaaaaaaatattgtgccAGAGGAATAGCGTGAGAACTTTTTATGTGGTCTCTCGGATTCATCTCAGTGAGCTGAAACACATCAGCTCAGTCACGCATGCACATTAAGATGGTTAAAAAAATTGACAGTTCTCCTAAAATTTCCTCACCCTAATGTTGTCCCAAACCTGTCTGAGCTTCTttgttctgttgaacacaatcttttgttcattcttcgatattttaaagaatgtttgtaACCAAACAGCTgccggtagccattgacttccacagtatttttttcccatacTACATAAGCCATTGGCTTCCATCAACCATTTGCTTACAGAGTTGAACCATTTGATTGCTACTCAAAACTATCACTTTTCAGGGGATTCCCAGTAAAAATCATGTAGCGGTGGTGTAAAATACACGTTTTTGACAGGGTTCCCCTAATGAAAGTCACACCCCAGGGGCTAAATACCACATTATTGGGGTTGCATCAACCTGCAGGCATGGCAACActggggtgaactatcactttttTTCGACCTTTTACTGAGGAGGTGACTGTTGGAAAATTCTGAGTGTGTTAACAAAAAGCCATTTTCTAATGTGTCTGGATTAATTTAGACATAGCACTGATTCTTATTCAAAAAGCCTCCCTAATCCAGCTGAGCTTTTATTCGTAgtgtcatatatttttattatttccaccTAGTGCAagaatttatttcaaaacttGTATCAATGAAAAAGCATGCAAAGCCATTCAAGCACCcattataaagtgttatcaatTTATTAACcgttactatatttatttaattactgctctatgtatttgttttattattctgtatccGAATCTATTTGGAAAGTTCTGTATATGCTCATCGATACAGTTAGAACAGGCTCGTGCTTTGTAGCTGAATGTTACAATAGATACTGTAGATTCTCTCACGCCTGAGGCCAAACCTCCCCTTTTCTAGAACTTTGTACAATCTCAGGTGTGATTGTCTAGATGAACTCATGCTCCAGAAGTACTCCTGATGTATGATCGCATGCTGAATATACTTATTTTTGAATGctgtagatttatttatatgcatgacCTTGACATGCCTATTTTAATCAATACCCTTCATTTCTATGACTTATATATCACTGTAATCacaatattttgcatttcaaatatatatatatatagatctgAAGAATATAGCATATTAACTGTAAAATATCTACAAACAAGCAGTTTTTGCAATGCAGTGAGTAATCTCAACAAGACCACCTTTATAGTCACTTATATTACTATTGCAATAGCCAGATTTACTAAAGCCTTTAGAGTTAGAGACTCAAATATATGTTATGCATCATTCAGAGCTGCGTTTCTGAATTTGTACATGCAAACTTTCTGAATGTTTGCCATGGCTTTATTAACTCTGGCCCAATATTTAAAAGATAGATGCGTATACAAAagttatcttttaaaataaaatattggaaTAGAGTTTGCCTAAGTGTTTCTGTTGCCACGAGCGCATTATTTTTTTAGGGGCTCAAAAAACAAATGGTTCCACGGTTGAAATCTCCCGTTTACGATCTGGCATCACCAAACACGAAAATGGCACCGAGCAACAATTGTGGATTTTATTGAACAATCCAAACATTATGAGTCACAAGTATGTTTGAACAGGTTTCGAATGAGGATTCCCACATTTGCCATGTTTGTGTTTCTAAACAATGTATGGATCagaaaatccattaaaaaaaaaaaaattataacaaacaAGTGGGCAAGTTTGTAAAGTAACTACAGAATTGGCAcacttttttgcaaaaaaaaaaaaaaaaagata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66652 lncRNA downstream 24598 13697499 ~ 13697711 (-) True G45039
TU66648 lncRNA downstream 28145 13693338 ~ 13694164 (-) True G45036
TU66619 lncRNA downstream 110716 13536944 ~ 13611593 (-) True G45014
TU66532 lncRNA downstream 364788 13356987 ~ 13357521 (-) True G44942
TU66531 lncRNA downstream 367526 13354307 ~ 13354783 (-) True G44941
XR_006251212.1 lncRNA upstream 37771 13823672 ~ 13835591 (-) False LOC122347350
XR_006251213.1 lncRNA upstream 37771 13823672 ~ 13835591 (-) False LOC122347350
XR_006251214.1 lncRNA upstream 37771 13823672 ~ 13835591 (-) True LOC122347350
TU66677 lncRNA upstream 51404 13837305 ~ 13837538 (-) True G45058
TU66688 lncRNA upstream 56833 13842734 ~ 13848641 (-) True G45064
XM_043242700.1 mRNA downstream 29483 13691026 ~ 13692826 (-) True mrpl47
XM_043241544.1 mRNA downstream 41015 13655260 ~ 13681294 (-) False tmem131
XM_043241543.1 mRNA downstream 41015 13655260 ~ 13681294 (-) True tmem131
XM_043241545.1 mRNA downstream 83364 13607613 ~ 13638945 (-) True nme7
XM_043241546.1 mRNA downstream 83366 13607516 ~ 13638943 (-) False nme7
XM_043242271.1 mRNA upstream 200146 13986047 ~ 14040163 (-) True lrrc7
XM_043241204.1 mRNA upstream 340673 14126574 ~ 14128317 (-) True cldn33b
XM_043242836.1 mRNA upstream 393971 14179872 ~ 14190329 (-) True lurap1
XM_043242907.1 mRNA upstream 411791 14197692 ~ 14200743 (-) True ttc4
XM_043241459.1 mRNA upstream 499596 14285497 ~ 14402960 (-) True pde4ba
TU66636 other downstream 41035 13668528 ~ 13681274 (-) False tmem131
unassigned_transcript_1263 other downstream 254370 13467868 ~ 13467939 (-) True trnaa-cgc_55
unassigned_transcript_1262 other downstream 254744 13467494 ~ 13467565 (-) True trnaa-ugc_115
unassigned_transcript_1261 other downstream 255083 13467155 ~ 13467226 (-) True trnaa-ugc_114
unassigned_transcript_1260 other downstream 255252 13466986 ~ 13467057 (-) True trnaa-cgc_54
TU66983 other upstream 374574 14160475 ~ 14193166 (-) True G45257
TU67455 other upstream 1543066 15328967 ~ 15330817 (-) False LOC122347580
TU67521 other upstream 1818009 15603910 ~ 15605470 (-) True G45606
TU67688 other upstream 2273067 16058968 ~ 16059767 (-) True G45730
TU67689 other upstream 2273992 16059893 ~ 16060466 (-) True G45731

Expression Profile